DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5800 and ddx55

DIOPT Version :9

Sequence 1:NP_573230.1 Gene:CG5800 / 32742 FlyBaseID:FBgn0030855 Length:826 Species:Drosophila melanogaster
Sequence 2:NP_001120242.1 Gene:ddx55 / 100145293 XenbaseID:XB-GENE-972462 Length:594 Species:Xenopus tropicalis


Alignment Length:682 Identity:206/682 - (30%)
Similarity:327/682 - (47%) Gaps:125/682 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 LSKKTQKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWS-RT 142
            |:...::.|:|.||.|.|.||..:|...:..||:...|||||||||||:||:||.|...:.. :.
 Frog    16 LNSSIRQTLSELKFTHMTPVQSATIPLFMNNKDIAAEAITGSGKTLAFVIPLLEILLKREEKLKK 80

  Fly   143 DGVGAIIISPTRELAYQIFETLKKVGKHH-DFSAGLIIGGKN-----LKFERTRMDQCNILICTP 201
            :.||||||:||||||.||.|.|....||. .||..|:|||.|     :||:.   ...||::.||
 Frog    81 NQVGAIIITPTRELAVQIDEVLSYFTKHFPQFSQILLIGGSNPVDDVMKFKE---HGGNIIVATP 142

  Fly   202 GRL----LQHMDENPLFN-TSTMEMLVLDEADRCLDMGFQKTLNSIIENFPPVRQTLLFSATQTN 261
            |||    .:..|...|.: ..|:::|:||||||.|||||:.::|:|:...|..|:|.|||||||.
 Frog   143 GRLEDMFRRQADGLDLVSYVKTLDVLILDEADRLLDMGFEASINTILGFLPKQRRTGLFSATQTQ 207

  Fly   262 TVQDLARLNLKDPVYVGYGGATPREEPSAS--TKKTPNTAVLAVPELLQQSYVVLNLEDKITMLW 324
            .:::|.|..|::||.:..     :|:..|:  |:|||..        ||..|::...::|...|.
 Frog   208 ELENLVRAGLRNPVRIAV-----KEKGVAATCTQKTPIR--------LQNYYMICKADEKFNKLV 259

  Fly   325 SFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRPGSPLLALYGTLHQDRRIAIYEDFLRKSHVVMF 389
            :|::...::|.:||.::|...:|..:....|.....::.::|.: :.:|..|:.:|.:.:..::.
 Frog   260 AFLQQRKQEKHLVFFSTCACVEYYGKALEALLKNVKVMCIHGKM-KHKRNRIFTEFRKLNSGILV 323

  Fly   390 STDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSARNKTRGECLLVLTPSEEEYMISALKEQL 454
            .|||.:||:|.|.||||||.|.|...|.::||.||:||....|..|:.|.|.||.|:     ..|
 Frog   324 CTDVMARGIDIPEVNWVVQYDPPSSASAFVHRCGRTARIGHHGSALVFLLPMEESYV-----SFL 383

  Fly   455 NIDIRCVQIDPKKLFS-----PRVK--IEAFLAQFPELRATAQRAFLSYIKSVFLMRNKRLFNVF 512
            :|:.:|...:..:|.|     |::|  .|:..|.|.:    ..:||:||:::........:|.|.
 Frog   384 SINQKCPLQEMTELISAVDLLPKLKSMAESDRAVFEK----GMKAFVSYVQAYAKHECNLIFRVK 444

  Fly   513 SLDLDAFAQSLGLAVTPRVPFLEKFLWRQKQLQQQKEQGDNAKSINPLLSKLTKQQSFGGGDEDE 577
            .||....|:..||...||:|.|                  ..|:.:..:|               
 Frog   445 DLDFSNLARGFGLLRMPRMPEL------------------RGKNFSDFVS--------------- 476

  Fly   578 ENSDDEDFIKVKRKDHDVEGEPVKLDEEDDTENEAEAPLVVPKREKLVTKASLAKKALK-KNLQV 641
             .:.|.|.|..|.|:.:.:.:.:..:..:..|:|.       :|.....||...:||.| |..:|
 Frog   477 -TTIDTDSIPYKDKNREKQRQKMLKERREKLESEG-------RRNFAKNKAWSKQKARKDKKKKV 533

  Fly   642 NSKLKFDDEGETMADDRSQMKALSARQRTVNQDDDDGGINLVLSKALLTEEDQYDKQRFRELVKK 706
            ..|.| .:||..:                   |:||            .:|..:|.:..:.|  |
 Frog   534 AQKRK-QEEGSDI-------------------DEDD------------VDELLHDTRLLKRL--K 564

  Fly   707 RHKLQREKLRKKAEEAKGSDDEEEQQDDDNAD 738
            :.|:..|:..|:...|  .:..|::...||:|
 Frog   565 KGKITEEEFEKQLTAA--GEKSEDEDGSDNSD 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5800NP_573230.1 PRK01297 2..471 CDD:234938 150/410 (37%)
DEADc 74..277 CDD:238167 94/209 (45%)
HELICc 311..437 CDD:238034 38/125 (30%)
DUF4217 474..530 CDD:290667 15/57 (26%)
ddx55NP_001120242.1 SrmB 5..519 CDD:223587 180/569 (32%)
DEADc 9..224 CDD:238167 94/210 (45%)
HELICc 252..371 CDD:238034 37/119 (31%)
DUF4217 403..462 CDD:290667 16/62 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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