DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8289 and Pc

DIOPT Version :10

Sequence 1:NP_573229.1 Gene:CG8289 / 32741 FlyBaseID:FBgn0030854 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_524199.1 Gene:Pc / 40358 FlyBaseID:FBgn0003042 Length:390 Species:Drosophila melanogaster


Alignment Length:191 Identity:40/191 - (20%)
Similarity:68/191 - (35%) Gaps:78/191 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 KKAKGR-GRRNAGTKKADDSIDPEKQWEVEKILDHVATKEGDMFKIRWKKYGPKDDSWEPSKNLA 271
            |.:||: ||.||    .||.:|  ..:..|||:.....|....::::||.:..:.::|||..|:.
  Fly     6 KGSKGKLGRDNA----TDDPVD--LVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL 64

  Fly   272 CDALIEKF--------------MRKQA----------------TQENVD---------------- 290
            ...||:.:              ::|:.                |:.:||                
  Fly    65 DRRLIDIYEQTNKSSGTPSKRGIKKKEKEPDPEPESEEDEYTFTENDVDTHQATTSSATHDKESK 129

  Fly   291 --------------VKELRESPKKTERLVDECYPRTNLHNRIERSSKR-----SSAKNRIF 332
                          :|..|.|.:::|.      |.|:.|:.....|||     ||:.|..|
  Fly   130 KEKKHHHHHHHHHHIKSERNSGRRSES------PLTHHHHHHHHESKRQRIDHSSSSNSSF 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8289NP_573229.1 CD_CSD 233..281 CDD:349274 12/61 (20%)
PcNP_524199.1 CD_polycomb 23..76 CDD:349291 13/54 (24%)
CBX7_C 341..373 CDD:465385
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.