DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8289 and Cbx1

DIOPT Version :10

Sequence 1:NP_573229.1 Gene:CG8289 / 32741 FlyBaseID:FBgn0030854 Length:336 Species:Drosophila melanogaster
Sequence 2:XP_006247295.1 Gene:Cbx1 / 360609 RGDID:1310714 Length:193 Species:Rattus norvegicus


Alignment Length:126 Identity:35/126 - (27%)
Similarity:57/126 - (45%) Gaps:18/126 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 KKADDSI-DPEKQWEVEKILDHVATKEGDMFKIRWKKYGPKDDSWEPSKNLACDALIEKFMRKQA 284
            ||.::.: :.|:::.|||:||....|....:.::||.:..:|::|||.:||.|..||.:|::.|.
  Rat     8 KKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 72

  Fly   285 TQENVDV--------------KELRESPKKTERLVDECYPRTNLHNRIERSSKRSSAKNRI 331
            |....|.              |.....|||.:   :|..|...|.:...|...|.....||
  Rat    73 TAHETDKSDGGKRKADSDSEDKGEESKPKKKK---EEALPIWFLQSEKPRGFARGLEPERI 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8289NP_573229.1 CD_CSD 233..281 CDD:349274 18/47 (38%)
Cbx1XP_006247295.1 CD_HP1beta_Cbx1 20..69 CDD:349297 18/48 (38%)
CSD_HP1beta_Cbx1 120..177 CDD:349301 3/11 (27%)

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