DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8289 and cbx1a

DIOPT Version :10

Sequence 1:NP_573229.1 Gene:CG8289 / 32741 FlyBaseID:FBgn0030854 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_956040.2 Gene:cbx1a / 326746 ZFINID:ZDB-GENE-030131-4945 Length:212 Species:Danio rerio


Alignment Length:121 Identity:39/121 - (32%)
Similarity:65/121 - (53%) Gaps:11/121 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 AQPQKVAAKSKS-----SPNAKKAKGRGRRNAGTKKADDSI-DPEKQWEVEKILDHVATKEGDMF 250
            :||.:..:.:.|     ||::|.|...|::.. .||.:|.: :.|:::.|||:||....|....:
Zfish     4 SQPTETVSDAPSVTEEVSPDSKLAATAGKKQT-KKKVEDVVEEEEEEYVVEKVLDRRVVKGRVEY 67

  Fly   251 KIRWKKYGPKDDSWEPSKNLACDALIEKFMRKQATQENVDVKELRESPKKTERLVD 306
            .::||.:..:|::|||..||.|..||.::|.|.  :.|.|.||  .|.|:.|...|
Zfish    68 LLKWKGFSEEDNTWEPEDNLDCPDLIAEYMTKH--KINDDKKE--SSAKRKESDTD 119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8289NP_573229.1 CD_CSD 233..281 CDD:349274 17/47 (36%)
cbx1aNP_956040.2 CD_CSD 56..98 CDD:475127 14/41 (34%)
CSD_HP1beta_Cbx1 139..196 CDD:349301
Blue background indicates that the domain is not in the aligned region.

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