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Protein Alignment CG8289 and Cbx2

DIOPT Version :9

Sequence 1:	NP_573229.1	Gene:	CG8289 / 32741	FlyBaseID:	FBgn0030854	Length:	336	Species:	Drosophila melanogaster
Sequence 2:	NP_001100541.1	Gene:	Cbx2 / 303730	RGDID:	1588561	Length:	523	Species:	Rattus norvegicus

Alignment Length:	290	Identity:	66/290 - (22%)
Similarity:	95/290 - (32%)	Gaps:	102/290 - (35%)

- Green bases have known domain annotations that are detailed below.

  Fly    20 ESENEEIDQQKSNGTGRSSRKTPNKRKAKLTVASDSEDSDCQTSTSNVDVPAARNKRKVGKARNA 84
            :.|:|:..|.:..|      |.|..|..|.||.     |.| :..|.:..|.|.:|.|...:.::
  Rat    60 KKEHEKEVQNRKRG------KRPRGRPRKHTVM-----SSC-SRRSKLKEPDAPSKSKSSSSSSS 112

  Fly    85 TTSPRKNGKKIVIEDSDDDANHSDVDPSADSSPR---------------KPNIKRQTRRSVRGET 134
            :||...:..:   |:.|||  .||:|....|..|               ||.:|...|:. ||.
  Rat   113 STSSSSSSDE---EEEDDD--DSDLDSKRGSRGRETHPVPQKKAQILVAKPELKDPIRKK-RGR- 170

  Fly   135 EDSNELPSTSKASAHASSPIKKRKLSR------------------ASTSSVKNGKKVA------- 174
               ..||...||:....|..|..|.:|                  |..:::|...|.|
  Rat   171 ---KPLPPEQKAARRPVSLAKVLKTTRKDLVTSAPKLPPPLSAPVAGLAALKAHTKEACGGPSTM 232

  Fly   175 --------------------------------EKDSESDVDAGTEDEKSAQPQKVAAKSKSSPNA 207
                                            .:.|:|...|.:.....||   .|.|....|:.
  Rat   233 ATPENLASLMKGMAGSPSRGGISWQSSIVHYMNRMSQSQAQAASRLALKAQ---AANKCSLGPDL 294

  Fly   208 K--KAKGR-GRRNAGTK--KADDSIDPEKQ 232
            |  ..||. |...||:|  ||..|:..|:|
  Rat   295 KVRTQKGELGVNPAGSKVPKAPGSVAAEQQ 324

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.