DRSC/TRiP Functional Genomics Resources

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Protein Alignment rrad and Rgk1

DIOPT Version :10

Sequence 1:XP_021333082.1 Gene:rrad / 327396 ZFINID:ZDB-GENE-030131-5607 Length:304 Species:Danio rerio
Sequence 2:NP_725875.3 Gene:Rgk1 / 14462605 FlyBaseID:FBgn0264753 Length:1379 Species:Drosophila melanogaster


Alignment Length:354 Identity:101/354 - (28%)
Similarity:158/354 - (44%) Gaps:90/354 - (25%)


- Green bases have known domain annotations that are detailed below.


Zfish     7 LNKGDKLRNMDKRRGSMPFPLHLQTLHRRSMPVDDRELRSMPAAQPSELPGLMRFNADRNSCVSD 71
            :|:||.|::...|..:.....:..|.|     :..::..|.||:..:           |.|..|.
  Fly  1060 VNRGDSLKSRRSRSNNSVASSNSSTEH-----LTTQQQLSAPASVSA-----------RTSLASS 1108

Zfish    72 SSDSVISSGSDSDGQVYKVVLLGEHGVGKSSLARIFGGVE-----DSNDCEETGNTYDRSLVVDD 131
            ...|..:.|:..    |:|::||...||||||...|...|     |::..:|:|.. ..|:::..
  Fly  1109 RESSTSNPGNGP----YRVLMLGGPAVGKSSLVSQFMTSEYLHAYDTSIDDESGEK-AVSVLLSG 1168

Zfish   132 EETSILLYDIWEQDNSQWLQDQCMRMGD--AYIIVYSVTDKSSFEKASELRIQLRRARQSENI-- 192
            ||:.::..|   ...::...|:|:...|  .|.::||..|:|||..|.::   |:....::||  
  Fly  1169 EESELIFID---HGYTEMTPDECLTNYDPHGYCVIYSAADRSSFSVAEQV---LQVLWTNQNIAQ 1227

Zfish   193 -PIILVGNKSDLVRSREVSMDEGSACAVVFDCKFIETSASLHHNVRDLFEGIVRQIRLRKDSKEE 256
             .:|||.||:||.|||.|:.:||.|.|..:||||||||..::|||.:|..|::.||||:.::.|:
  Fly  1228 KAVILVSNKADLARSRLVTSEEGKAMATAYDCKFIETSVGINHNVDELLVGLLSQIRLKLENPEK 1292

Zfish   257 N-----ARRMANCKR-----------------------------------------RESISKKAK 275
            :     .|.:...||                                         |.|.|.|.|
  Fly  1293 SRDLFRKRSIRKSKRRACSPLNAGCLNANTPLGPLGEAVATPPGSAQSSPRKYRGSRTSTSLKVK 1357

Zfish   276 RFLGRMVARKNKKMAFRQKSKSCHDLSVL 304
            ..|||:..|.:       |||||.:|.||
  Fly  1358 GLLGRVWTRDS-------KSKSCENLHVL 1379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rradXP_021333082.1 RGK 88..304 CDD:206715 84/271 (31%)
Rgk1NP_725875.3 DUF2967 16..899 CDD:402654
P-loop containing Nucleoside Triphosphate Hydrolases 1121..1379 CDD:476819 84/271 (31%)
Blue background indicates that the domain is not in the aligned region.

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