DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8611 and Ddx56

DIOPT Version :9

Sequence 1:NP_788922.1 Gene:CG8611 / 32725 FlyBaseID:FBgn0027602 Length:975 Species:Drosophila melanogaster
Sequence 2:XP_006251499.1 Gene:Ddx56 / 289780 RGDID:1303195 Length:546 Species:Rattus norvegicus


Alignment Length:651 Identity:171/651 - (26%)
Similarity:274/651 - (42%) Gaps:170/651 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   332 LGLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVE-LLQKQQP 395
            :||.|..::.:.||...|. |.:|:|.||..|:|||:|.|::||||||.|||:|::: ||.|:..
  Rat    12 MGLDPRLLQAVTDLGWSRP-TLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQLLLHKKAT 75

  Fly   396 RIQRKDGVLALVIVPTRELVMQTYELIQKLVKPYTWIV-PGSLLGGESRKSEKARLRKGINILIG 459
            ....:..|..||:|||:||..|...:||:|.......| ..::...|...|::|.|.:..::::|
  Rat    76 GPVMEQAVRGLVLVPTKELARQAQSMIQQLASYCARDVRVANVSAAEDSASQRAVLMEKPDVVVG 140

  Fly   460 TPGRLVDHLLHTASFKL-TKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQL-Q 522
            ||.|:::| |...:.|| ..|:.|::||||.|...|:|.::|.|:         |   .||:: |
  Rat   141 TPSRILNH-LQQKNLKLRDSLELLVVDEADLLFSFGFEDELKSLL---------C---HLPRIYQ 192

  Fly   523 RMLLSATLTSQVQQLAGLTLKNPLYIDNSDEAASAALKSKDGYQKETIEALLEVDDGLGEYQEDV 587
            ..|:|||....||.|..|.|.||:.:    :...:.|...|  |.:..:.:.|.::         
  Rat   193 AFLMSATFNEDVQTLKELVLHNPVTL----KLQESQLPGPD--QLQQFQVVCETEE--------- 242

  Fly   588 TGVLSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMSTTEMVNFHHDMLNEALT 652
                   :...|.|.::  ||.|:...:||.  |:...:.::..:|:   |..:....:||    
  Rat   243 -------DKFLLLYALL--KLSLIRGKALLF--VNTLERGYRLRLFL---EQFSIPSCVLN---- 289

  Fly   653 RRVLDEEDEQEKGDSDDDGDIPLL----------QGL------RFFKLHGSMTQTERQGVFRGFR 701
                              |::||.          |||      ...::.|...:.:|||  ||.:
  Rat   290 ------------------GELPLRSRCHIISQFNQGLYDCVIATDAEILGPQVKAKRQG--RGSK 334

  Fly   702 -DCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRKGRAVLFLTPSEAQF 765
             |.||.   ....|.||||...:..|:.:..|.|...:|||.||||||...|..:.|:.|:|...
  Rat   335 GDKASD---PESGVARGIDFHHVSAVLNFDLPPTAEAYVHRAGRTARANNPGIVLTFVLPTEQSS 396

  Fly   766 VRHLEKKRIRIQQGDMYAYLQTLLPKD--------------DEARTV----------QEAASNLQ 806
            :..:|:    :..|:..|.:  |||..              |..|:|          :|....|.
  Rat   397 LGKIEE----LLSGEGQAPI--LLPYQFQMEEIESFRYRCRDAMRSVTKQAIREARLKEIKEELL 455

  Fly   807 H--KFQTLLEDD-REL----HDKSCKAFVSWMKFYSTFPKELKPIFNVRIAHMGHFAKSFALKEA 864
            |  |.:|..||: |:|    ||            ....|..:||       |:|:          
  Rat   456 HSEKLKTYFEDNPRDLQLLRHD------------LPLHPAVVKP-------HLGN---------- 491

  Fly   865 PSKFAAKHAAPKAAPPTNRLTYTERDPEKIQAQKRAKRRFTTTVSGEVRQLQQRDVGAQ-KPGAP 928
                ...:..|.|   ...|.:..:...|:...::||:   ......:|..:.|  |.: ||.|.
  Rat   492 ----VPDYLVPAA---LRGLVHPRKKRRKMPFSRKAKK---VKTQNPLRDFKHR--GKKPKPTAK 544

  Fly   929 P 929
            |
  Rat   545 P 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8611NP_788922.1 DUF2413 203..>285 CDD:287302
P-loop_NTPase 332..548 CDD:304359 81/219 (37%)
DEXDc 348..554 CDD:214692 76/209 (36%)
HELICc 601..757 CDD:238034 44/172 (26%)
DUF4217 805..866 CDD:290667 15/67 (22%)
Ddx56XP_006251499.1 SrmB 9..521 CDD:223587 162/620 (26%)
P-loop_NTPase 9..219 CDD:304359 81/224 (36%)
HELICc 234..388 CDD:238034 46/203 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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