DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8611 and vas

DIOPT Version :9

Sequence 1:NP_788922.1 Gene:CG8611 / 32725 FlyBaseID:FBgn0027602 Length:975 Species:Drosophila melanogaster
Sequence 2:NP_001260458.1 Gene:vas / 26067080 FlyBaseID:FBgn0283442 Length:661 Species:Drosophila melanogaster


Alignment Length:621 Identity:149/621 - (23%)
Similarity:268/621 - (43%) Gaps:175/621 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 FRAQL------EEERRQKRREEGGGDQEASADEEDAKNNSGGGSPRVKPSSAVKESKKSSDIEDS 245
            ||.:|      :|.|.:..|||.||::....|.|                            |..
  Fly   128 FRGRLYENEDGDERRGRLDREERGGERRGRLDRE----------------------------ERG 164

  Fly   246 GESGEE-----SATSDEEPDESSAQSPGQEKEPKQTAKKPPKAEETSSTNRFRTKKIGL-----F 300
            ||.||.     :.....|.|.::..:..::.|.|:....||:    .|.:.......|:     |
  Fly   165 GERGERGDGGFARRRRNEDDINNNNNIVEDVERKREFYIPPE----PSNDAIEIFSSGIASGIHF 225

  Fly   301 DQSDVEALKQLGQRAVKPVKETIFTGSKISTLGLHPHAVKNLEDLL-------SIRELTSVQQKT 358
            .:.:...:|..|....:|::.  ||.:             :|.|::       ..:..|.:|:.:
  Fly   226 SKYNNIPVKVTGSDVPQPIQH--FTSA-------------DLRDIIIDNVNKSGYKIPTPIQKCS 275

  Fly   359 IPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQ-------QPRIQRKDGVLALVIVPTRELVM 416
            ||.:..|:|::..:|||||||.|:.||::..|.:.       :|::        :::.|||||.:
  Fly   276 IPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQV--------VIVSPTRELAI 332

  Fly   417 QTYELIQKLV-KPYTWIVPGSLLGGESRKSEKARLRKGINILIGTPGRLVDHLLHT-ASFKLTKL 479
            |.:...:|.. :.|..|  |.:.||.|.:.:...:.:|.:::|.|||||:|.:..| .:|:.|: 
  Fly   333 QIFNEARKFAFESYLKI--GIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTR- 394

  Fly   480 QFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSATLTSQVQQLAGLTLKN 544
             |::||||||:|::|:..|:::::..:..:         |:.|.::.|||...::|::||..|||
  Fly   395 -FVVLDEADRMLDMGFSEDMRRIMTHVTMR---------PEHQTLMFSATFPEEIQRMAGEFLKN 449

  Fly   545 PLYIDNSDEAASAALKSKDGYQKETIEALLEVDDGLGEYQEDVTGVLSIPENLQLSYVVVPPKLR 609
            .:::         |:....|...:..:.:.||:    :|.:                     :.:
  Fly   450 YVFV---------AIGIVGGACSDVKQTIYEVN----KYAK---------------------RSK 480

  Fly   610 LVALSSLLAKEVDASPKQFKAIVFMSTTEMVNFHHDMLNEALTRRVLDEEDEQEKGDSDDDGDIP 674
            |:   .:|:::.|.:      |||:.|....:|....|:|.                     :.|
  Fly   481 LI---EILSEQADGT------IVFVETKRGADFLASFLSEK---------------------EFP 515

  Fly   675 LLQGLRFFKLHGSMTQTERQGVFRGFRDCASCVLLATDVVGRGIDVPDIKLVVQYTPPQTTADFV 739
            ..      .:||...|::|:...|.|::.:..||:||.|..||:|:.:||.|:.|..|....|:|
  Fly   516 TT------SIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYV 574

  Fly   740 HRVGRTARAGRKGRAVLFLTPSE-----AQFVRHLE 770
            ||:|||.|.|..|||..|..|.:     |..|:.||
  Fly   575 HRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILE 610

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8611NP_788922.1 DUF2413 203..>285 CDD:287302 15/86 (17%)
P-loop_NTPase 332..548 CDD:304359 65/231 (28%)
DEXDc 348..554 CDD:214692 63/214 (29%)
HELICc 601..757 CDD:238034 42/155 (27%)
DUF4217 805..866 CDD:290667
vasNP_001260458.1 DEADc 247..454 CDD:238167 67/249 (27%)
DEXDc 260..467 CDD:214692 65/236 (28%)
Helicase_C 475..584 CDD:278689 39/165 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451594
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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