DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8611 and ddx56

DIOPT Version :9

Sequence 1:NP_788922.1 Gene:CG8611 / 32725 FlyBaseID:FBgn0027602 Length:975 Species:Drosophila melanogaster
Sequence 2:NP_001120553.1 Gene:ddx56 / 100145707 XenbaseID:XB-GENE-941616 Length:552 Species:Xenopus tropicalis


Alignment Length:684 Identity:161/684 - (23%)
Similarity:271/684 - (39%) Gaps:183/684 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   332 LGLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPR 396
            |||....:|::.| |...:.|.:|:|.||..|:|||:|.|::||||||.||::|:::.|.:.:..
 Frog     9 LGLDDRLLKSIAD-LGWAKPTLIQEKAIPLALEGKDLLARARTGSGKTAAYSIPIIQNLLQAKMT 72

  Fly   397 IQRKDGVLALVIVPTRELVMQTYELIQKL-VKPYTWIVPGSLLGGESRKSEKARLRKGINILIGT 460
            :. :..:..|::|||:||..|..::|::| |.....|....:.|.....:::..|.:..:|::||
 Frog    73 VS-EQAIRVLILVPTKELGQQVQQMIRQLTVYCARDIKVADISGQADISAQRPILMEKPDIVVGT 136

  Fly   461 PGRLVDHLLHTASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQL-QRM 524
            |.|::.|:..........||.|::||||.:...|:|.|:|.|:         |   :||:: |..
 Frog   137 PSRVLTHMTQQTICVRDTLQALVIDEADLVFSFGFEEDLKNLL---------C---QLPKIFQSF 189

  Fly   525 LLSATLTSQVQQLAGLTLKNPLYIDNSDEAASAALKSKDGYQKETIEALLEVDDGLGEYQEDVTG 589
            |:|||.:..||.|..|.|.||:.:...:.      :..|..|........|.:|           
 Frog   190 LMSATFSEDVQALKELVLHNPVTLKLEES------QFPDSSQLTQFHIQCEEED----------- 237

  Fly   590 VLSIPENLQLSYVVVPPKLRLVALSSLL-AKEVDASPK------QFK--AIVFMSTTEMVNFHH- 644
                  ...|.|.::  ||.|:...::: ..|||.|.:      ||.  |.|..|...:.:..| 
 Frog   238 ------KFLLLYTLL--KLSLIRGKTIIFVNEVDRSYRLKLFLEQFSIPACVLNSELPIHSRCHI 294

  Fly   645 -DMLNEALTRRVLDEEDEQEKGDSDDDGDIPLLQGLR-FFKLHGSMTQTERQGVFRGFRDCASCV 707
             ...|:.....:: ..||....|       |.::|.| ..|..|...|..:...:.         
 Frog   295 ISQFNQGFYDYII-ATDEHSLAD-------PSVKGRRGEGKKKGGKGQKGQDKEYG--------- 342

  Fly   708 LLATDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRKGRAVLFLTPSEAQFVRHLEKK 772
                  |.||||..::..|:.:..||:...::||.||||||...|.|:.|:..:|...:..:|:.
 Frog   343 ------VSRGIDFQNVSTVLNFDFPQSVDSYIHRAGRTARANNPGVALTFVAHTELPLLSEVEEA 401

  Fly   773 --------------RIRIQQGDMYAY-----LQTLLP---KDDEARTVQEAASNLQHKFQTLLED 815
                          |..:::.:.:.|     ::::..   |:...:.::|...| ..|.:|..||
 Frog   402 LGGGVPDEHVLKPYRFCMEEVEGFRYRCRDAMRSVTKQAIKEARLKEIKEELLN-SEKLKTYFED 465

  Fly   816 ---DREL--HDKSCKAFVSWMKFYSTFPKELKPIFNVRIAHMGHFAKSFALKEAPSKFAAKHAAP 875
               |.:|  |||            ...|..:||          |      ||..|...       
 Frog   466 NPRDFQLLRHDK------------PLHPAIVKP----------H------LKNVPEYL------- 495

  Fly   876 KAAPPTNRLTYTERDPEKIQAQKRAKRRFTTTVSGEVRQLQQRDVGAQKPGAPPPKGGFIGGGVG 940
              .||..|..      ..|..:||.:|:.                          |.|.:|....
 Frog   496 --IPPALRAV------ADIHNRKRKRRKL--------------------------KAGNLGFQGT 526

  Fly   941 RSSFMKSLGKSRALNMSEFDSGLPPEGAAKRRKQ 974
            ||.|.:.....|:...::          :|||::
 Frog   527 RSKFQRGQNPLRSFKYAK----------SKRRRK 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8611NP_788922.1 DUF2413 203..>285 CDD:287302
P-loop_NTPase 332..548 CDD:304359 73/217 (34%)
DEXDc 348..554 CDD:214692 67/207 (32%)
HELICc 601..757 CDD:238034 42/167 (25%)
DUF4217 805..866 CDD:290667 15/65 (23%)
ddx56NP_001120553.1 PRK11192 5..469 CDD:236877 132/522 (25%)
P-loop_NTPase 6..214 CDD:304359 73/218 (33%)
Helicase_C 251..378 CDD:278689 35/149 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D973872at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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