DRSC/TRiP Functional Genomics Resources

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Protein Alignment B-H1 and Vax2

DIOPT Version :10

Sequence 1:NP_523387.1 Gene:B-H1 / 32724 FlyBaseID:FBgn0011758 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_072159.2 Gene:Vax2 / 64572 RGDID:621133 Length:292 Species:Rattus norvegicus


Alignment Length:348 Identity:84/348 - (24%)
Similarity:122/348 - (35%) Gaps:94/348 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   231 DGGV--DGGVGLAPPAGGDLDDSSDYHEENED--CDSGNMDDHSVCSNGGKDDDGNSVKSGSTSD 291
            |||.  |.|.......||......: |...||  .|:|:.....:.........|:....|.:..
  Rat     3 DGGAERDRGPKRREEPGGRSGCRGE-HRGAEDLRADTGSTSPREIAGTSASSPAGSRESGGDSDG 66

  Fly   292 MSGLSK----------------------------KQRKARTAFTDHQLQTLEKSFERQKYLSVQE 328
            ...|.:                            :.::.||:||..||..||..|:|.:|:..:|
  Rat    67 QQALGETDHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRE 131

  Fly   329 RQELAHKLDLSDCQVKTWYQNRRTKWKRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAA 393
            |.|||.:|:||:.|||.|:||||||.|:..:..||..|.:....||                   
  Rat   132 RTELARQLNLSETQVKVWFQNRRTKQKKDQSRDLEKRASSSASEAF------------------- 177

  Fly   394 GAAHGATPHTNIDIYYRQAAAAAAMQKPLPYNLYAGVPSVGVGVGVGVGPAPFSHLSASSSLSSL 458
                 ||  :|:.....|....:..:.|....|..|:|.:..|           |...|......
  Rat   178 -----AT--SNVLRLLEQGRLLSVPRAPSLLALSPGLPGLTAG-----------HRGTSLGDPRN 224

  Fly   459 SSYYQSAAAAASAANPGGPHPVAPPPSVGGGSPPSGLVKPIPAHSASASPPPRPPSTPSPTLNPG 523
            ||...:...:|||::|      .||              |:||...||:|....|::.....:..
  Rat   225 SSQRLNPMPSASASSP------LPP--------------PLPAVCFSAAPLLDLPASYKLGSSAF 269

  Fly   524 SPPGR----SVDSCSQSDDEDQI 542
            .|..|    .|.|..|||.:..|
  Rat   270 EPYSRLEQQKVGSPGQSDKKADI 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B-H1NP_523387.1 Homeodomain 300..356 CDD:459649 29/55 (53%)
Vax2NP_072159.2 vax upstream domain 74..101 0/26 (0%)
homeobox 102..161 30/58 (52%)
Homeodomain 103..159 CDD:459649 29/55 (53%)
vax downstream domain 182..193 1/10 (10%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..241 9/45 (20%)
vax terminal domain 266..274 1/7 (14%)

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