DRSC/TRiP Functional Genomics Resources

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Protein Alignment B-H1 and Vax1

DIOPT Version :10

Sequence 1:NP_523387.1 Gene:B-H1 / 32724 FlyBaseID:FBgn0011758 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_072158.1 Gene:Vax1 / 64571 RGDID:621132 Length:336 Species:Rattus norvegicus


Alignment Length:310 Identity:86/310 - (27%)
Similarity:124/310 - (40%) Gaps:89/310 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   251 SSDYHEENEDCD--SGNM------DDHSVCSNGGKDDDGNSVKSGSTSD---------------- 291
            |.:.|:|:.:..  .|::      :.....|..|..:|.|..||.|::|                
  Rat    22 SKNAHKESREIKGAEGSLPAAFLKEPQGAFSASGASEDCNKSKSNSSADPDYCRRILVRDAKGSI 86

  Fly   292 -----MSGLS-KKQRKARTAFTDHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQNR 350
                 ..||. .:.::.||:||..||..||..|:|.:|:..:||.|||.:|:||:.|||.|:|||
  Rat    87 REIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNR 151

  Fly   351 RTKWKRQTAVGLELLAEAGNFAA----FQRLYGG----SPYLGAWPYAAAAGAAHGATPHTNIDI 407
            |||.|:......||.:.....||    .:.|..|    .|.|.|.....|.|             
  Rat   152 RTKQKKDQGKDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATG------------- 203

  Fly   408 YYRQAAAAAAMQKPLPYNLYAGVPSVGVGVGVGVGPAPFSHLSASSSLSSLSSYYQSAAAAASAA 472
                 |..:|::.|       .:|::|.|...|                       ||||||:||
  Rat   204 -----ALGSALRGP-------SLPALGAGAAAG-----------------------SAAAAAAAA 233

  Fly   473 NPGGPHPVAP--PPSVGGGSPPSGLVKPIPAHSASASPPPRPPSTPSPTL 520
            ...||...|.  ||:| ||:|..|...|...|:.:.:......|.|.|:|
  Rat   234 TAPGPAGAASQHPPAV-GGAPGPGPAGPGGLHAGAPTASHGLFSLPVPSL 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B-H1NP_523387.1 Homeodomain 300..356 CDD:459649 29/55 (53%)
Vax1NP_072158.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..39 4/16 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 50..69 7/18 (39%)
vax upstream domain 72..99 2/26 (8%)
homeobox 100..159 30/58 (52%)
Homeodomain 101..157 CDD:459649 29/55 (53%)
vax downstream domain 178..189 2/10 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 236..267 12/31 (39%)
vax terminal domain 315..323
Blue background indicates that the domain is not in the aligned region.

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