DRSC/TRiP Functional Genomics Resources

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Protein Alignment B-H1 and nkx2.2b

DIOPT Version :10

Sequence 1:NP_523387.1 Gene:B-H1 / 32724 FlyBaseID:FBgn0011758 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_001007783.2 Gene:nkx2.2b / 493627 ZFINID:ZDB-GENE-050217-3 Length:237 Species:Danio rerio


Alignment Length:207 Identity:60/207 - (28%)
Similarity:81/207 - (39%) Gaps:53/207 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   247 DLDDSSDYHEENEDCDSGNMDDHSVCSNGGKDDD--------GNS------VKSGSTSDM----- 292
            ||.|::|....:||.:  :..|..:.:|..|..|        |:|      |.|.|..::     
Zfish    17 DLPDTNDEGSVSEDTE--DEQDEGLNANQKKQHDSSRDALWLGSSCGHKYPVPSASPEELNPELS 79

  Fly   293 ---------SGLSKKQRKARTAFTDHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQ 348
                     |..|.|:||.|..|:..|...||:.|.:|:|||..||:.||..|.|:..|||.|:|
Zfish    80 ADESVDRESSEDSGKKRKRRILFSKTQTFELERRFRQQRYLSAPEREHLAKLLHLTPTQVKIWFQ 144

  Fly   349 NRRTKWKRQTA-------------VGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAAHGAT 400
            |.|.|.||..|             |.:.:|...|...   .|.|......:.|.|.|...|....
Zfish   145 NHRYKVKRARAEKGLDPYLLSPRRVSIPVLVRDGRPC---HLLGPQDITASIPPATAPFTAFNMK 206

  Fly   401 P-------HTNI 405
            |       |.||
Zfish   207 PFPQIHHSHNNI 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B-H1NP_523387.1 Homeodomain 300..356 CDD:459649 26/55 (47%)
nkx2.2bNP_001007783.2 Homeodomain 96..152 CDD:459649 26/55 (47%)

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