Protein Alignment B-H1 and Hoxc9

DIOPT Version :10

• Sequence 1: NP_523387.1
• Gene: B-H1 / 32724
• FlyBaseID: FBgn0011758
• Length: 544
• Species: Drosophila melanogaster
• Sequence 2: NP_001094377.1
• Gene: Hoxc9 / 368178
• RGDID: 1595784
• Length: 260
• Species: Rattus norvegicus
• Alignment Length: 235
• Identity: 56/235 - (23%)
• Similarity: 77/235 - (32%)
• Gaps: 82/235 - (34%)

  Fly   145 SALHH---PQPH-------------P-------PTHPHTHPHALMHPHGKLGHFPPTAGGNGLNV 186
            |.::|   ||||             |       |:.|....|..:.|....|.......|:|.:.
  Rat    74 SVVYHPYGPQPHLGADTRYMRTWLEPLSGAVSFPSFPAGGRHYALKPDAYPGRRADCGPGDGRSY 138

  Fly   187 AQYAAAMQQHYAAAAAAAAARNNAAAAAAAAAAAAAAGVAAPPVDGGVDGGVGLAPPAGGDLDDS 251
            ..|         ...:....|:.|.....:..|.|.||
  Rat   139 PDY---------MYGSPGELRDRAPQTLPSPEADALAG--------------------------- 167

  Fly   252 SDYHEENEDCDSGNMDDHSVCSNGGKDDDGNSVKSGSTSDMSGLSKKQRKARTAFTDHQLQTLEK 316
            |.:.||..|.|..|             ...|.:.:.||          ||.|..:|.:|...|||
  Rat   168 SKHKEEKADLDPSN-------------PVANWIHARST----------RKKRCPYTKYQTLELEK 209

  Fly   317 SFERQKYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKR 356
            .|....||:...|.|:|..|:|::.|||.|:||||.|.|:
  Rat   210 EFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKK 249

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B-H1	NP_523387.1	Homeodomain	300..356	CDD:459649	25/55 (45%)
Hoxc9	NP_001094377.1	Hox9_act	1..179	CDD:461369	25/140 (18%)
		Homeodomain	193..241	CDD:459649	20/47 (43%)