Protein Alignment B-H1 and Hoxc13

DIOPT Version :10

• Sequence 1: NP_523387.1
• Gene: B-H1 / 32724
• FlyBaseID: FBgn0011758
• Length: 544
• Species: Drosophila melanogaster
• Sequence 2: XP_235695.3
• Gene: Hoxc13 / 315337
• RGDID: 1563984
• Length: 328
• Species: Rattus norvegicus
• Alignment Length: 314
• Identity: 71/314 - (22%)
• Similarity: 104/314 - (33%)
• Gaps: 108/314 - (34%)

  Fly   111 GSSGGSSPAHSNNNNNINGDNCEASNVAGVGVLPSALHHPQPHPPTHPHTHPHALMHPHGKLGHF 175
            |...|:||..:.:.:.:.| :|.||:...:          .|||         .|..|...||
  Rat    42 GGCSGASPGKAPSMDGLGG-SCPASHCRDL----------LPHP---------VLARPPAPLG-- 84

  Fly   176 PPTAGGNGLNVAQYAAAMQQHYAAAAAAAAARNNAAAAAAAAAAAAAAGVAAPPVDGGVDGGVGL 240
                           |.....|....|..|||..|...|...:::|..|...|  .||...|..|
  Rat    85 ---------------APQGAVYTDIPAPEAARQCAPPPAPPTSSSATLGYGYP--FGGSYYGCRL 132

  Fly   241 A------------------PPAGGDL--DDSSDYHEE---------NEDCDSGNMD--------- 267
            :                  |...|.|  ||.|...:|         :.....|.:|
  Rat   133 SHNVNLQQKPCSYHPGDKYPEPSGALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISG 197

  Fly   268 ---------------DHSVCSNGGKDDDGNSVKSGSTS---------DMSGLS------KKQRKA 302
                           .|...|||. |......|..|.|         |:..|.      ::.||.
  Rat   198 HPEPRHDALIPVEGYQHWALSNGW-DSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKK 261

  Fly   303 RTAFTDHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKR 356
            |..:|..||:.|||.:...|:::.::|:.::...:||:.||..|:||||.|.|:
  Rat   262 RVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKK 315

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B-H1	NP_523387.1	Homeodomain	300..356	CDD:459649	21/55 (38%)
Hoxc13	XP_235695.3	HoxA13_N	52..166	CDD:463521	32/152 (21%)
		Homeodomain	259..310	CDD:459649	18/50 (36%)