DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment B-H1 and hoxd11a

DIOPT Version :10

Sequence 1:NP_523387.1 Gene:B-H1 / 32724 FlyBaseID:FBgn0011758 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_571242.1 Gene:hoxd11a / 30405 ZFINID:ZDB-GENE-990415-117 Length:276 Species:Danio rerio


Alignment Length:114 Identity:34/114 - (29%)
Similarity:60/114 - (52%) Gaps:11/114 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   243 PAGGDLDDSSDYHEENEDCDSGNMDDHSVCSNGGKDDDGNSVKSGSTSDMSGLSKKQRKARTAFT 307
            |.....:.|:|..|:.:...:..:::.|..|.  .|::.||..|.:         |.||.|..::
Zfish   159 PGDAACNPSTDSAEQTKQDPTDTVEEESSVST--CDEEKNSGSSAT---------KSRKKRCPYS 212

  Fly   308 DHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKR 356
            .:|::.||:.|....|::.::|.:|:..|.|:|.|||.|:||||.|.|:
Zfish   213 KYQIRELEREFFFNVYINKEKRLQLSRMLSLTDRQVKIWFQNRRMKEKK 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B-H1NP_523387.1 Homeodomain 300..356 CDD:459649 22/55 (40%)
hoxd11aNP_571242.1 DUF3528 23..144 CDD:432284
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 139..207 12/58 (21%)
Homeodomain 205..261 CDD:459649 22/55 (40%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.