DRSC/TRiP Functional Genomics Resources

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Protein Alignment B-H1 and hoxc11a

DIOPT Version :10

Sequence 1:NP_523387.1 Gene:B-H1 / 32724 FlyBaseID:FBgn0011758 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_571240.1 Gene:hoxc11a / 30403 ZFINID:ZDB-GENE-990415-111 Length:306 Species:Danio rerio


Alignment Length:361 Identity:78/361 - (21%)
Similarity:132/361 - (36%) Gaps:105/361 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 TMSSGGSTTTASGIGKPNRSRFMINDILAGSAAAAFYKQQQHHQQLHHHNNNNNS-----GSSGG 115
            |...|..|..||.|..|:.:.:    :...||.::|..|....|..:.::.|.:.     ..|.|
Zfish    19 TSEFGDRTGCASNIYLPSCTYY----VPEFSAVSSFLPQGPSRQITYPYSTNLSQVQPVRDVSYG 79

  Fly   116 SSPA---HSNNNNNINGDNCEASNVAGVGVL------PSAL------------HHPQPHP-PTHP 158
            ..|:   |..:|        .||..:|..::      ||.:            ||.|.|| .:||
Zfish    80 LDPSSKWHHRSN--------YASCYSGEDLVHRDCLPPSTMTEMLMKNESVYSHHHQHHPNSSHP 136

  Fly   159 HTHPHALMHPHGKLGHFPPTAGGNGL-----NVAQYAAAMQQHYAAAAAAAAARNNAAAAAAAAA 218
            .|            |.:......|.|     ...:.|.....:.:......:..|....::....
Zfish   137 ST------------GFYTGVGKNNVLPQGFDRFFETAYCSTDNQSEHCLQKSEMNKLETSSQQPT 189

  Fly   219 AAAAAGVAAPPVDGGVDGGVGLAPPAGGDLDDSSDYHEENEDCDSGNMDDHSVCSNGGKDDDGNS 283
            |.:||                        .:...|..:|.|..:||:      |::.. ..|||:
Zfish   190 AVSAA------------------------REPEKDPEDEEEHTNSGS------CTSAA-TKDGNA 223

  Fly   284 VKSGSTSDMSGLSKKQRKARTAFTDHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQ 348
            .||..:|     :.:.||.|..::..|::.||:.|....|::.::|.:|:..|:|:|.|||.|:|
Zfish   224 SKSSHSS-----TPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQ 283

  Fly   349 NRRTKWKRQTAVGLELLAEAGNFAAFQRLYGGSPYL 384
            |||.|.|:.:...|:             .:.|:|.|
Zfish   284 NRRMKEKKLSRDRLQ-------------YFSGNPLL 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B-H1NP_523387.1 Homeodomain 300..356 CDD:459649 22/55 (40%)
hoxc11aNP_571240.1 DUF3528 42..167 CDD:432284 28/144 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 177..238 18/96 (19%)
Homeodomain 235..291 CDD:459649 22/55 (40%)

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