DRSC/TRiP Functional Genomics Resources

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Protein Alignment B-H1 and hoxb6a

DIOPT Version :10

Sequence 1:NP_523387.1 Gene:B-H1 / 32724 FlyBaseID:FBgn0011758 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_571194.1 Gene:hoxb6a / 30341 ZFINID:ZDB-GENE-990415-106 Length:228 Species:Danio rerio


Alignment Length:214 Identity:55/214 - (25%)
Similarity:85/214 - (39%) Gaps:69/214 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 LGHFPPTA-GGNGLNVAQYAAAMQQHYAAAAAAAAARNNAAAAAAAAAAAAAAGVAAPPVDGGVD 235
            |.|:|..| ||:.:....|.::..|.                |..|.:.|.|||..         
Zfish    36 LRHYPGAAYGGSSVQEKAYPSSFYQQ----------------ANGAYSRATAAGPC--------- 75

  Fly   236 GGVGLAPPAGGDLDDSSDYHEENEDCDSGNMDDHS-VCSNGGKDDD--GNSVKS----------- 286
                       |...:|.|.|::..|...::::|| |.|...:..|  |::.||           
Zfish    76 -----------DYATASFYREKDPACALASIEEHSFVLSQDHRKTDCTGSTGKSIYPEADEQKPS 129

  Fly   287 -------------GSTSDMSGLSKKQRKARTAFTDHQLQTLEKSFERQKYLSVQERQELAHKLDL 338
                         ..|...:|     |:.|..:|.:|...|||.|...:||:.:.|.|:||.|.|
Zfish   130 APVYPWMQRMNSCNGTFGNAG-----RRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 189

  Fly   339 SDCQVKTWYQNRRTKWKRQ 357
            ::.|:|.|:||||.|||::
Zfish   190 TERQIKIWFQNRRMKWKKE 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B-H1NP_523387.1 Homeodomain 300..356 CDD:459649 25/55 (45%)
hoxb6aNP_571194.1 Antp-type hexapeptide 132..137 0/4 (0%)
Homeodomain 151..207 CDD:459649 25/55 (45%)

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