Protein Alignment B-H1 and Cdx4

DIOPT Version :10

• Sequence 1: NP_523387.1
• Gene: B-H1 / 32724
• FlyBaseID: FBgn0011758
• Length: 544
• Species: Drosophila melanogaster
• Sequence 2: NP_001100412.1
• Gene: Cdx4 / 302400
• RGDID: 1561529
• Length: 288
• Species: Rattus norvegicus
• Alignment Length: 313
• Identity: 78/313 - (24%)
• Similarity: 115/313 - (36%)
• Gaps: 86/313 - (27%)

  Fly   111 GSSGGSSPAHSNNNNNINGDNCEASNVAGVGVLPSALHHPQPHPPTHPH--THPH-ALMHPHGKL 172
            |:||||            |....|||....              |.:||  .:|| :.|.|||
  Rat    30 GTSGGS------------GSPLPASNFTAA--------------PVYPHYMGYPHMSNMDPHG-- 66

  Fly   173 GHFPPTAGGNGLNVAQYAAAMQQHYA------------AAAAAAAARNNAAAAAAAAAAAAAAGV 225
                |:.|           |....|:            ::.......|:..:::.|..:...:.:
  Rat    67 ----PSLG-----------AWSSPYSPPREDWSTYPGPSSTMGTVPMNDMTSSSPAFGSPDYSTL 116

  Fly   226 AAPPVDGGVDGGVGLAPPAGGDLDDSSDYHEENEDCDSGNMDDHSVCSNGGKDDDGNSVKS---- 286
                   |..||.|.| ..||.|.|::.  |.....|||        ::||......|..|
  Rat   117 -------GPTGGAGGA-SNGGSLPDAAS--ESLVSIDSG--------TSGGATSPSRSRHSPYAW 163

  Fly   287 -GSTSDMSGLSKKQRKARTAFTDHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQNR 350
             ..|..::|.::.:.|.|..:||||...|||.|...:|::::.:.|||..|.||:.|||.|:|||
  Rat   164 MRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIRRKSELAVNLGLSERQVKIWFQNR 228

  Fly   351 RTKWKRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYA--AAAGAAHGATP 401
            |.|.::.....:.....:|......   .||...|..|.|  ....|..|..|
  Rat   229 RAKERKMIKKKISQFENSGGSVQSD---SGSISPGELPNAFFTTPSAVRGFQP 278

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B-H1	NP_523387.1	Homeodomain	300..356	CDD:459649	26/55 (47%)
Cdx4	NP_001100412.1	Caudal_act	13..174	CDD:461413	43/204 (21%)
		Homeodomain	179..234	CDD:459649	26/54 (48%)