DRSC/TRiP Functional Genomics Resources

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Protein Alignment B-H1 and Nkx1-1

DIOPT Version :9

Sequence 1:NP_523387.1 Gene:B-H1 / 32724 FlyBaseID:FBgn0011758 Length:544 Species:Drosophila melanogaster
Sequence 2:XP_234082.6 Gene:Nkx1-1 / 298981 RGDID:1564874 Length:443 Species:Rattus norvegicus


Alignment Length:475 Identity:126/475 - (26%)
Similarity:156/475 - (32%) Gaps:167/475 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 SNVAGVGVLPSALHHPQPHPPTHPHTHP---------HALMHPHGKLGHFPPTAGGNGLNVAQYA 190
            |..|..|.:|:.   |.|.||..|.:.|         ...|....:|..| |.||...|.|:...
  Rat     4 SGPAAPGDIPAL---PPPPPPPEPGSGPAPPAPAATARDAMDGRAELPIF-PRAGVPPLAVSDTV 64

  Fly   191 AAMQQHYAAAAAAAAARNNA------------------------AAAAAAAAAAAAAGVAAPPVD 231
            .|:.....||..||..|..:                        ...|..|..|.||.|..|...
  Rat    65 PAVPDGAGAARPAAPPRPTSFSVLDILDPNKFNSRRRRCVLLGPVVPATCAPCAPAACVPVPAAS 129

  Fly   232 G----------------GVDGGVGLAPPAGGD---------------------LDDSSDYHEENE 259
            |                ||....|..|.:.||                     .|...:..||:|
  Rat   130 GRSPRAELERRALSAATGVAAATGAEPTSTGDSYRADEAEANGYSSGSGRSPTADSEDEAPEEDE 194

  Fly   260 DCD-----------------SGNMDDH-SVCS--------------------------------- 273
            |.|                 ||.:... |.||                                 
  Rat   195 DEDQAPEVQDVQGTEEPRGGSGGLGARGSGCSGAAEVEASPVDEAAAPGPRGNSPGAPGPPVTAA 259

  Fly   274 ---NGGKDDDGNSV-------KSGSTSDMSGLSKKQRKARTAFTDHQLQTLEKSFERQKYLSVQE 328
               |.|....|.:|       ::||.|.    |.|.|:||||||..||..||..|:..:||||.|
  Rat   260 GAGNAGSTPQGAAVATKPKRKRTGSDSK----SGKPRRARTAFTYEQLVALENKFKATRYLSVCE 320

  Fly   329 RQELAHKLDLSDCQVKTWYQNRRTKWKRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAA 393
            |..||..|.|::.|||.|:||||||||:|.. |.:..|..|.        ||.|..||.|   .|
  Rat   321 RLNLALSLSLTETQVKIWFQNRRTKWKKQNP-GADTSAPTGG--------GGGPGPGAGP---GA 373

  Fly   394 GAAHGATPHTNIDIYYRQAAAAAAMQKPLPYNLYAGVPSVGVGVGVGVGPAPFSHLSASSSLSSL 458
            |...|.:|          .:.:..|..||..:..||.|:...|..|.....||  ||:.:.||..
  Rat   374 GLPGGLSP----------LSPSPPMGAPLALHGPAGYPAHSPGGLVCAAQLPF--LSSPAVLSPF 426

  Fly   459 SSYYQSAAAAASAANPGGPH 478
            ....|:..|.|..|    ||
  Rat   427 VLGSQTYGAPAFYA----PH 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B-H1NP_523387.1 Homeobox 303..355 CDD:278475 30/51 (59%)
Nkx1-1XP_234082.6 Homeobox 295..347 CDD:278475 30/51 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0488
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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