DRSC/TRiP Functional Genomics Resources

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Protein Alignment B-H1 and Nkx1-1

DIOPT Version :10

Sequence 1:NP_523387.1 Gene:B-H1 / 32724 FlyBaseID:FBgn0011758 Length:544 Species:Drosophila melanogaster
Sequence 2:XP_234082.6 Gene:Nkx1-1 / 298981 RGDID:1564874 Length:443 Species:Rattus norvegicus


Alignment Length:475 Identity:126/475 - (26%)
Similarity:156/475 - (32%) Gaps:167/475 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 SNVAGVGVLPSALHHPQPHPPTHPHTHP---------HALMHPHGKLGHFPPTAGGNGLNVAQYA 190
            |..|..|.:|:.   |.|.||..|.:.|         ...|....:|..| |.||...|.|:...
  Rat     4 SGPAAPGDIPAL---PPPPPPPEPGSGPAPPAPAATARDAMDGRAELPIF-PRAGVPPLAVSDTV 64

  Fly   191 AAMQQHYAAAAAAAAARNNA------------------------AAAAAAAAAAAAAGVAAPPVD 231
            .|:.....||..||..|..:                        ...|..|..|.||.|..|...
  Rat    65 PAVPDGAGAARPAAPPRPTSFSVLDILDPNKFNSRRRRCVLLGPVVPATCAPCAPAACVPVPAAS 129

  Fly   232 G----------------GVDGGVGLAPPAGGD---------------------LDDSSDYHEENE 259
            |                ||....|..|.:.||                     .|...:..||:|
  Rat   130 GRSPRAELERRALSAATGVAAATGAEPTSTGDSYRADEAEANGYSSGSGRSPTADSEDEAPEEDE 194

  Fly   260 DCD-----------------SGNMDDH-SVCS--------------------------------- 273
            |.|                 ||.:... |.||                                 
  Rat   195 DEDQAPEVQDVQGTEEPRGGSGGLGARGSGCSGAAEVEASPVDEAAAPGPRGNSPGAPGPPVTAA 259

  Fly   274 ---NGGKDDDGNSV-------KSGSTSDMSGLSKKQRKARTAFTDHQLQTLEKSFERQKYLSVQE 328
               |.|....|.:|       ::||.|.    |.|.|:||||||..||..||..|:..:||||.|
  Rat   260 GAGNAGSTPQGAAVATKPKRKRTGSDSK----SGKPRRARTAFTYEQLVALENKFKATRYLSVCE 320

  Fly   329 RQELAHKLDLSDCQVKTWYQNRRTKWKRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAA 393
            |..||..|.|::.|||.|:||||||||:|.. |.:..|..|.        ||.|..||.|   .|
  Rat   321 RLNLALSLSLTETQVKIWFQNRRTKWKKQNP-GADTSAPTGG--------GGGPGPGAGP---GA 373

  Fly   394 GAAHGATPHTNIDIYYRQAAAAAAMQKPLPYNLYAGVPSVGVGVGVGVGPAPFSHLSASSSLSSL 458
            |...|.:|          .:.:..|..||..:..||.|:...|..|.....||  ||:.:.||..
  Rat   374 GLPGGLSP----------LSPSPPMGAPLALHGPAGYPAHSPGGLVCAAQLPF--LSSPAVLSPF 426

  Fly   459 SSYYQSAAAAASAANPGGPH 478
            ....|:..|.|..|    ||
  Rat   427 VLGSQTYGAPAFYA----PH 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B-H1NP_523387.1 Homeodomain 300..356 CDD:459649 33/55 (60%)
Nkx1-1XP_234082.6 Homeodomain 292..348 CDD:459649 33/55 (60%)

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