DRSC/TRiP Functional Genomics Resources

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Protein Alignment B-H1 and Hmx2

DIOPT Version :10

Sequence 1:NP_523387.1 Gene:B-H1 / 32724 FlyBaseID:FBgn0011758 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_001099773.1 Gene:Hmx2 / 293538 RGDID:1565366 Length:273 Species:Rattus norvegicus


Alignment Length:243 Identity:70/243 - (28%)
Similarity:99/243 - (40%) Gaps:68/243 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   228 PPVDG---GVDGGVGLAPPAGGD----LDDS-SDYHEENEDCDSGNMDDHSVCSNGGKDDDGNSV 284
            ||:..   |...|.|.|.||..:    |..| .|:.||.|          .:...|.........
  Rat    82 PPIPFPCLGTPKGSGGAGPAASERTPFLSPSHPDFKEEKE----------RLLPAGSPSPGPERP 136

  Fly   285 KSGSTSDMSGLSKKQRKARTAFTDHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQN 349
            :.|.....:|.:||  |.||.|:..|:..||.:|:.::|||..||..||..|.|::.|||||:||
  Rat   137 RDGGAERQAGAAKK--KTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQN 199

  Fly   350 RRTKWKRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAAH-GATPHTNIDIYYRQAA 413
            ||.|||||.:..||                            ||..|| .|.....:.:.:|.  
  Rat   200 RRNKWKRQLSAELE----------------------------AANMAHASAQTLVGMPLVFRD-- 234

  Fly   414 AAAAMQKPLPYNLYAGVPSVGVGVGVGVGPAPFSHLSASSSLSSLSSY 461
             ::.::.|:|.:|              ..|||..:  .||:||:|..|
  Rat   235 -SSLLRVPVPRSL--------------AFPAPLYY--PSSNLSALPLY 265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B-H1NP_523387.1 Homeodomain 300..356 CDD:459649 28/55 (51%)
Hmx2NP_001099773.1 Homeodomain 150..206 CDD:459649 29/57 (51%)

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