Protein Alignment B-H1 and Hoxd1

DIOPT Version :10

• Sequence 1: NP_523387.1
• Gene: B-H1 / 32724
• FlyBaseID: FBgn0011758
• Length: 544
• Species: Drosophila melanogaster
• Sequence 2: NP_001099354.1
• Gene: Hoxd1 / 288151
• RGDID: 1309179
• Length: 328
• Species: Rattus norvegicus
• Alignment Length: 286
• Identity: 82/286 - (28%)
• Similarity: 105/286 - (36%)
• Gaps: 68/286 - (23%)

  Fly   128 NGDNCEASNVAGVGVLPSALHHPQPHPPTHPHTHP-----------------------HALMHPH 169
            :||.      |.|..||.|...|.|.||..|...|                       .|....:
  Rat    48 SGDG------AFVSCLPLAAARPTPSPPVAPAQPPGPQPAASRYAPCTLEGAYERGAAPASAAEY 106

  Fly   170 GKLGHFPPTAGGNGLNVAQYAAAMQQHYAAAAAAAAARNNAAAAAAAAAAAAAAG----VAAPPV 230
            |.||..|.......|..|...:....|||.:|..::..:...:.....||.|..|    ....|.
  Rat   107 GFLGSGPAFDFPGALGRAADDSGPHVHYATSAVFSSGGSFLLSGQVDFAAFAEPGPFPACLKEPA 171

  Fly   231 DGGVDGGVGLAPPAGGDLDDSSDYHEENEDCDSGNMDDHS------VCSNGGKDDDGNSVKS--- 286
            ||.......::|..|.....:|.        .||....||      |..|..|       ||
  Rat   172 DGHPGPFQTVSPAPGACPKPASP--------TSGLPAAHSTFEWMKVKRNAPK-------KSKLS 221

  Fly   287 --GSTSDMSGLSKKQRKARTAFTDHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQN 349
              |:||..|.:       ||.|:..||..|||.|...|||:...|.|:|:.|.|:|.|||.|:||
  Rat   222 EYGATSPSSAI-------RTNFSTKQLTELEKEFHFNKYLTRARRMEIANCLQLNDTQVKIWFQN 279

  Fly   350 RRTKWKRQTAVGLELLAEAGNFAAFQ 375
            ||.|.|::...|  |||.|.:.|:.|
  Rat   280 RRMKQKKREREG--LLATAASVASLQ 303

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
B-H1	NP_523387.1	Homeodomain	300..356	CDD:459649	27/55 (49%)
Hoxd1	NP_001099354.1	COG5576	<208..325	CDD:227863	44/112 (39%)
		Homeodomain	233..286	CDD:459649	27/52 (52%)