DRSC/TRiP Functional Genomics Resources

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Protein Alignment B-H1 and Hoxc6

DIOPT Version :10

Sequence 1:NP_523387.1 Gene:B-H1 / 32724 FlyBaseID:FBgn0011758 Length:544 Species:Drosophila melanogaster
Sequence 2:XP_063119084.1 Gene:Hoxc6 / 252885 RGDID:620626 Length:264 Species:Rattus norvegicus


Alignment Length:286 Identity:69/286 - (24%)
Similarity:103/286 - (36%) Gaps:73/286 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 PQPHPPTHPHTHPHALMHPHGKLGHFPPTAGGNGLNVAQYAAAMQQ---HYAAAAAAAAARNNAA 211
            |:..|..:..|......|.|.:|  :||..........||:....|   :..|...|.|..::..
  Rat    30 PEHSPEYYGRTRESGFQHHHQEL--YPPPPPRPSYPERQYSCTSLQGPGNSRAHGPAQAGHHHPE 92

  Fly   212 AAAAAAAAAAAAGVAAPPVDGGVDGGVGLAPPAGGDLDDSSDYHEENEDCDSGNMDDHSVCSNGG 276
            .:......|..:|.:|.|         ..||||                           ||...
  Rat    93 KSQPLCEPAPLSGASASP---------SPAPPA---------------------------CSQPA 121

  Fly   277 KDDDGNSVKSG------------STSDMSGLSKKQRKARTAFTDHQLQTLEKSFERQKYLSVQER 329
            .|...::....            ||.:.:....:.:::|||:|..|:..|||.|...:||:.:.|
  Rat   122 PDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRR 186

  Fly   330 QELAHKLDLSDCQVKTWYQNRRTKWKRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAG 394
            .|:||.|.||:.|:|.|:||||.|||:.                 .|| ..:....|.|..||..
  Rat   187 IEIAHSLCLSERQIKIWFQNRRMKWKKD-----------------HRL-PNTKVRSAPPAGAAPS 233

  Fly   395 AAHGATPHTNIDIYYRQAAAAAAMQK 420
            ....|||.|:.|  :.|:|.....|:
  Rat   234 TLSAATPGTSED--HSQSATPPEQQR 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B-H1NP_523387.1 Homeodomain 300..356 CDD:459649 27/55 (49%)
Hoxc6XP_063119084.1 None

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