DRSC/TRiP Functional Genomics Resources

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Protein Alignment B-H1 and Hoxd3

DIOPT Version :10

Sequence 1:NP_523387.1 Gene:B-H1 / 32724 FlyBaseID:FBgn0011758 Length:544 Species:Drosophila melanogaster
Sequence 2:NP_034598.2 Gene:Hoxd3 / 15434 MGIID:96207 Length:433 Species:Mus musculus


Alignment Length:501 Identity:118/501 - (23%)
Similarity:171/501 - (34%) Gaps:159/501 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 HYGLQPPAVAHSIHSTTTMSSGGSTTTASGIGKPNRSRFMINDILAGSAAAAFYKQQQHHQQLHH 103
            |....|||.|:|:.|... ||..|..:::.:..|......:|    ||..              .
Mouse    47 HQPYPPPAAANSLDSDYP-SSACSIQSSAPLRAPAHKGAELN----GSCM--------------R 92

  Fly   104 HNNNNNSGSSGGSSPAHSNNNNNINGDNCEASNVAGVGVLPSALHHPQPHPPTHPHTHPHALMHP 168
            ....|:.|..||:.|...|                      |....|||.||..|...|.:    
Mouse    93 PGTGNSQGGGGGNQPPGLN----------------------SEQQPPQPPPPPPPTLPPSS---- 131

  Fly   169 HGKLGHFPPTAGGNGLNVAQYAAAMQQHYAAAAAAAAARNNAAAAAAAAAAAAAAGVAAPPVDGG 233
                    ||..|:|:                    .|:......:|:::::..:....|     
Mouse   132 --------PTNPGSGV--------------------PAKKTKGGLSASSSSSTISKQIFP----- 163

  Fly   234 VDGGVGLAPPAGGDLDDSSDYHEENEDCDSGNMDDHSVCSNGGKDDDGNSVKSGSTSDMSGLSKK 298
                                :.:|:..    |....:.|:..|:          :..|.|.....
Mouse   164 --------------------WMKESRQ----NSKQKNSCATSGE----------NCEDKSPPGPA 194

  Fly   299 QRKARTAFTDHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKR-QTAVGL 362
            .::.|||:|..||..|||.|...:||....|.|:|:.|:|::.|:|.|:||||.|:|: |.|.|:
Mouse   195 SKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGI 259

  Fly   363 ELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAAHGATPHTNIDIYYRQAAAAAAMQKPLPYNLY 427
             |.:.||.  :.:|    ||.||.   ||...|..|..|......|...:..|.|..:|   |:|
Mouse   260 -LHSPAGQ--SPER----SPPLGG---AAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQP---NMY 311

  Fly   428 AGVPSVGVGVGVGVGPAPFSHLSASSSLSSLSSYYQSAAAAASAANPGGPHPVAPPPSVGGGSPP 492
                      |:....||.     ||.|.....|         .|....|||:|   |.|||...
Mouse   312 ----------GLAAYTAPL-----SSCLPQQKRY---------PAPEFEPHPMA---SNGGGFAS 349

  Fly   493 SGLVKPIPAHSASASPPPRPPSTPSPTLNPG---SPPGRSVD-SCS 534
            :.| :..|.:..........| |..|..|.|   .|...||| ||:
Mouse   350 ANL-QGSPVYVGGNFVDSMAP-TSGPVFNLGHLSHPSSASVDYSCA 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B-H1NP_523387.1 Homeodomain 300..356 CDD:459649 25/55 (45%)
Hoxd3NP_034598.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 44..198 41/262 (16%)
Antp-type hexapeptide 161..166 1/29 (3%)
Homeodomain 196..252 CDD:459649 25/55 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 258..280 11/31 (35%)
DUF4074 370..431 CDD:463833 10/24 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..433
Blue background indicates that the domain is not in the aligned region.

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