DRSC/TRiP Functional Genomics Resources

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Protein Alignment B-H1 and CDX2

DIOPT Version :10

Sequence 1:NP_523387.1 Gene:B-H1 / 32724 FlyBaseID:FBgn0011758 Length:544 Species:Drosophila melanogaster
Sequence 2:XP_011533177.1 Gene:CDX2 / 1045 HGNCID:1806 Length:321 Species:Homo sapiens


Alignment Length:254 Identity:66/254 - (25%)
Similarity:97/254 - (38%) Gaps:74/254 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   161 HPHALMHPHGKLGHFPPTAGGNGLNVA--------QYAAAMQQHYAAAAAAAAARNNAAAAAAAA 217
            :|.::.|             ..|||:|        ||......|.||||||||..::|.:...:.
Human    14 YPSSVRH-------------SGGLNLAPQNFVSPPQYPDYGGYHVAAAAAAAANLDSAQSPGPSW 65

  Fly   218 AAA--------------AAAGVAAPPVDGGVDGGVGLAPPAGGDLDDSSDYHEENE--------- 259
            .||              ..|..||..|..|::||   :|.|.......:|||..:.         
Human    66 PAAYGAPLREDWNGYAPGGAAAAANAVAHGLNGG---SPAAAMGYSSPADYHPHHHPHHHPHHPA 127

  Fly   260 ---DCDSGNMDD-----------------------HSVCSNGGKDDDGNSVKSGSTSDMSGLSKK 298
               .|.||.:..                       .::|....|....:......||..|.:..:
Human   128 AAPSCASGLLQTLNPGPPGPAATAAAEQLSPGGQRRNLCEWMRKPAQQSLGSQALTSPSSTVKTR 192

  Fly   299 QR-KARTAFTDHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKR 356
            .: |.|..:||||...|||.|...:|::::.:.|||..|.||:.|||.|:||||.|.::
Human   193 TKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERK 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B-H1NP_523387.1 Homeodomain 300..356 CDD:459649 26/56 (46%)
CDX2XP_011533177.1 Caudal_act 13..179 CDD:461413 37/180 (21%)
Homeodomain 196..251 CDD:459649 26/54 (48%)

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