DRSC/TRiP Functional Genomics Resources

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Protein Alignment B-H1 and nkx1-2

DIOPT Version :9

Sequence 1:NP_523387.1 Gene:B-H1 / 32724 FlyBaseID:FBgn0011758 Length:544 Species:Drosophila melanogaster
Sequence 2:XP_002937845.1 Gene:nkx1-2 / 100486193 XenbaseID:XB-GENE-854960 Length:246 Species:Xenopus tropicalis


Alignment Length:255 Identity:74/255 - (29%)
Similarity:99/255 - (38%) Gaps:85/255 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   229 PVDGGVDGGVGLAPPAGGDLDDSSDYHEENEDCDSGNMDDHSVCSNGGKDDDGNSVKSGSTSDMS 293
            |.|..|.|....|..:.|:.::..: .|||:  ::.|:...:.|                     
 Frog    58 PSDSMVSGPEIKAETSPGEPEELPE-KEENQ--ETQNVPSVTNC--------------------- 98

  Fly   294 GLSKKQRKARTAFTDHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKRQT 358
                |.|:||||||..||..||..|...:||||.||..||..|.|::.|||.|:||||||||:|.
 Frog    99 ----KPRRARTAFTYEQLVALESRFRSSRYLSVCERLSLALTLHLTETQVKIWFQNRRTKWKKQQ 159

  Fly   359 AVG-LELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAAHGATPHTNIDIYYRQAAAAAAMQKPL 422
            .:| ||     |...:.|    ..|.:....:          ||                   ||
 Frog   160 PIGSLE-----GRGCSIQ----NCPTIPGPRF----------TP-------------------PL 186

  Fly   423 P-YNLYAGVPSVGVGVGVGVGPAP---FSHLSASSSL-------------SSLSSYYQSA 465
            | |.....:|.:|.|.. .:.|.|   ||..|.|..|             |..:|||.|:
 Frog   187 PNYPCATHIPHIGAGAN-HLSPFPGIFFSPPSTSFGLSPTGATYPQFIGSSRFTSYYSSS 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B-H1NP_523387.1 Homeobox 303..355 CDD:278475 30/51 (59%)
nkx1-2XP_002937845.1 Homeobox 104..157 CDD:365835 31/52 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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