DRSC/TRiP Functional Genomics Resources

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Protein Alignment B-H2 and lbx2

DIOPT Version :9

Sequence 1:NP_523386.1 Gene:B-H2 / 32723 FlyBaseID:FBgn0004854 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_001007135.1 Gene:lbx2 / 64276 ZFINID:ZDB-GENE-001206-2 Length:257 Species:Danio rerio


Alignment Length:260 Identity:76/260 - (29%)
Similarity:110/260 - (42%) Gaps:68/260 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   257 DERSRSPLMLQQLGGNGGNNNNNNNNSSSASNNNNNNNNSASANS----NIISGNSSSSNNNNGS 317
            :||.|.|  |.||....  |:|......|..:..|..:...|..|    .::...:.||.:.|| 
Zfish    19 EERRRGP--LDQLPPPA--NSNKPLTPFSIEDILNKPSVKKSVGSLCPPRVLEKVTGSSASRNG- 78

  Fly   318 GNGNMLLGGPGS-----------SISGDQASTIDDSDSDDCGGKDDDGDDSMKNGSSANGDSSSH 371
                  :..|.|           :..|.:.|.|..::.              :...:|.|...: 
Zfish    79 ------ISAPSSPLCALEELASKTFKGLEVSVIQAAEG--------------REHINAFGQRQA- 122

  Fly   372 LSLSLSKKQRKARTAFTDHQLQTLEKSFERQKYLSVQDRMELANKLELSDCQVKTWYQNRRTKWK 436
                 |||:||:|||||:||:..|||.|..|||||..||.::|.:|.|::.||.||:||||.|.|
Zfish   123 -----SKKRRKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLK 182

  Fly   437 RQTAVGLELLAEAGNY-----AAFQRL---------YGGA---TPYLSAWPYAAAAAAQSPHGAT 484
            |...   |:.|:..:.     .|.|:|         :||:   :|.||  |.|...:..|..|.|
Zfish   183 RDLE---EMKADVESLKKIPPQALQKLVSMEDMEDAHGGSGPISPSLS--PRAFPQSPSSSRGQT 242

  Fly   485  484
            Zfish   243  242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B-H2NP_523386.1 Homeobox 384..436 CDD:278475 30/51 (59%)
lbx2NP_001007135.1 Required for convergent extension movement and hypaxial myogenesis during gastrulation. Required for the formation of thick and thin myofilaments. Required for myod1 expression in the pectoral fin bud. Required for continuous expression of cxcl12a in the posterior lateral mesoderm at the tail bud stage and in adaxial cells at the 10-somite stage. /evidence=ECO:0000269|PubMed:19216761, ECO:0000269|PubMed:22216300, ECO:0000269|PubMed:22406073 1..46 10/30 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..43 9/27 (33%)
Homeobox 129..183 CDD:395001 30/53 (57%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 206..257 11/39 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0488
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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