DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment B-H2 and nkx2.5

DIOPT Version :10

Sequence 1:NP_523386.1 Gene:B-H2 / 32723 FlyBaseID:FBgn0004854 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_571496.2 Gene:nkx2.5 / 30696 ZFINID:ZDB-GENE-980526-321 Length:314 Species:Danio rerio


Alignment Length:270 Identity:69/270 - (25%)
Similarity:100/270 - (37%) Gaps:64/270 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   306 GNSSSSNNNNGSG--NGNMLLGGPGSSISGDQASTIDDSDSDDCGGKDDDGDDSMKNGSSANGDS 368
            ||..:|.|.:.||  ..|.|..........|  .|.:|.:..|.|...:|..:.:|...:..   
Zfish    76 GNKINSINFSASGFYAKNFLEMDYVKDAKTD--DTFEDKEKKDIGCCQEDPGEDLKLDDAER--- 135

  Fly   369 SSHLSLSLSKKQRKARTAFTDHQLQTLEKSFERQKYLSVQDRMELANKLELSDCQVKTWYQNRRT 433
                  ...:|:||.|..|:..|:..||:.|::|||||..:|..|||.|:|:..|||.|:||||.
Zfish   136 ------PKQRKRRKPRVLFSQAQVYELERRFKQQKYLSAPERDHLANVLKLTSTQVKIWFQNRRY 194

  Fly   434 KWKRQTA-VGLELLAEA------------------GNYAAFQRLYGGATPYLSAWPYAAAAAAQS 479
            |.|||.. ..||::..|                  |:.:.:...|.....:.:...|.|.:...|
Zfish   195 KCKRQRQDQTLEMVGIAPPRRISVPVLVRDGKPCLGDTSTYNTSYNVGINHFTYNTYPAFSNFPS 259

  Fly   480 PHGATPSAIDIYYRQAAAAAAMQKPSLPASYRMYQSSIPPGMS-----------LPGMPAPPPPG 533
            |..:..|                     .:|....|||.|..|           |..:.|.....
Zfish   260 PGNSNYS---------------------CNYPSSMSSIQPSQSNSNYMNFGVGDLNNVQASFQSS 303

  Fly   534 AAPMLSGYYA 543
            :.|.|.|..|
Zfish   304 SVPSLHGIRA 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B-H2NP_523386.1 Homeodomain 381..437 CDD:459649 28/55 (51%)
nkx2.5NP_571496.2 Homeodomain 142..198 CDD:459649 28/55 (51%)

Return to query results.
Submit another query.