DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment B-H2 and nkx2-1

DIOPT Version :10

Sequence 1:NP_523386.1 Gene:B-H2 / 32723 FlyBaseID:FBgn0004854 Length:645 Species:Drosophila melanogaster
Sequence 2:XP_002935383.1 Gene:nkx2-1 / 100135015 XenbaseID:XB-GENE-485985 Length:346 Species:Xenopus tropicalis


Alignment Length:407 Identity:100/407 - (24%)
Similarity:137/407 - (33%) Gaps:130/407 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 ALHRHGHGLTGDPAQHLSHLSHLSHQQHHPHLHHPM----HDERSRSP-LMLQQLGGN-GGNNNN 278
            |:...|.|.....|...|.:|..|.|||....:.|:    |...:..| |....:||. .||..|
 Frog    28 AMESAGLGAPLSAAYRQSQVSQASMQQHGMGHNGPVSAAYHMTAAGVPQLSHTTMGGYCNGNLGN 92

  Fly   279 NNNNSSSASNNNNNNNNSAS----ANS----NIISGNSSSSNNNNGSGNGNM-LLGGPGSSISGD 334
            ..|.|......:...|:||:    ||.    :.||.....|:..|..|.||| .||..|.|::..
 Frog    93 LGNMSELPPYQDTMRNSSATGWYGANPDPRFSTISRFMGPSSGMNMGGLGNMGSLGDVGKSMTPL 157

  Fly   335 QASTIDDSDSDDCGGKDDDGDDSMKNGSSANGDSSSHLSLSLSKKQRKARTAFTDHQLQTLEKSF 399
            ||:                                         .:||.|..|:..|:..||:.|
 Frog   158 QAT-----------------------------------------PRRKRRVLFSQAQVYELERRF 181

  Fly   400 ERQKYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLAEAGNYAAFQRLYGGATP 464
            ::|||||..:|..||:.:.|:..|||.|:||.|.|.|||.                         
 Frog   182 KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA------------------------- 221

  Fly   465 YLSAWPYAAAAAAQSPHGATPSAIDIYYRQAAAAAAMQKPSLPASYRMYQSSIPPGMSLP----- 524
                                        :..||...||:.:  :|.:..||  |..:::|     
 Frog   222 ----------------------------KDKAAQQQMQQDN--SSCQQQQS--PRRVAVPVLVKD 254

  Fly   525 GMPAPP---PPGAAPMLSGYYAAAAAAAASAG-AQQQQQQPPAASRSPATSQSANSEADCERTSS 585
            |.|...   .|.||........|.|....|.| ...|..|..:|.:||.....:|        |.
 Frog   255 GKPCQAGSNTPTAALQSHQQQTATAITVTSNGLGPHQSHQTNSAGQSPDLVPHSN--------SP 311

  Fly   586 SSRQRLITPSPPLNPGS 602
            ||.|..:|....||..|
 Frog   312 SSLQNQVTSLSHLNSSS 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B-H2NP_523386.1 Homeodomain 381..437 CDD:459649 25/55 (45%)
nkx2-1XP_002935383.1 Homeodomain 163..219 CDD:459649 25/55 (45%)

Return to query results.
Submit another query.