DRSC/TRiP Functional Genomics Resources

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Protein Alignment B-H2 and hoxb5

DIOPT Version :10

Sequence 1:NP_523386.1 Gene:B-H2 / 32723 FlyBaseID:FBgn0004854 Length:645 Species:Drosophila melanogaster
Sequence 2:NP_001094494.1 Gene:hoxb5 / 100113366 XenbaseID:XB-GENE-1005991 Length:258 Species:Xenopus tropicalis


Alignment Length:250 Identity:59/250 - (23%)
Similarity:93/250 - (37%) Gaps:72/250 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   272 NGGNNNNNNNNSSSASNNNNNNNNSASANSNIISGNSSSSNNNNG------------SGNGNMLL 324
            ||.:.:..|..:.|:||.:.:...:|.:..     .|:...|.||            |..|:...
 Frog    15 NGPDYHVLNYGTGSSSNLSGSYREAAGSMQ-----PSAYGYNYNGMDLSVSRAAASSSHYGDSAF 74

  Fly   325 GGPGSSISGDQASTIDDSDSDDCGGKDDD----GDDSMKNGSSANGDSSSHLSLSLSKKQ----- 380
            .|..|....:|:..:...|...|.....|    .|.:...||||........|.|...::     
 Frog    75 PGQESRFRANQSCPLATPDPLPCAKSHKDELSPTDPATSAGSSAQFTEVEETSASSETEESSTPR 139

  Fly   381 --------------------------------------------RKARTAFTDHQLQTLEKSFER 401
                                                        ::||||:|.:|...|||.|..
 Frog   140 SSAPPRALQENSSPGAAGTDGQNPQIFPWMRKLHINHDMTGPDGKRARTAYTRYQTLELEKEFHF 204

  Fly   402 QKYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLAEAGNYAAFQ 456
            .:||:.:.|:|:|:.|.||:.|:|.|:||||.|||:...  |:.::.|...:|||
 Frog   205 NRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNK--LKSMSLATGSSAFQ 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
B-H2NP_523386.1 Homeodomain 381..437 CDD:459649 27/55 (49%)
hoxb5NP_001094494.1 Homeodomain 184..240 CDD:459649 27/55 (49%)

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