DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fim and pls1

DIOPT Version :9

Sequence 1:NP_728074.1 Gene:Fim / 32721 FlyBaseID:FBgn0024238 Length:641 Species:Drosophila melanogaster
Sequence 2:XP_017213221.1 Gene:pls1 / 334273 ZFINID:ZDB-GENE-030131-6205 Length:665 Species:Danio rerio


Alignment Length:624 Identity:316/624 - (50%)
Similarity:428/624 - (68%) Gaps:28/624 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 QTVQEFKQNLEELIPNLDANKDGFIDLHELKDALNQVGFKLAGYQVREMIDEYKGKQLTAFQGKL 75
            |..:|..::|.|....:|.:..|::...||::...:..|.|.|||:||:::::.... |....|:
Zfish    44 QISREDLEDLREAFNKIDIDNSGYVSDFELQELFREASFHLPGYQIREIVEKFIAGD-TNKDEKI 107

  Fly    76 NLEEFEALCLDLKSKDVASTFKTVVSKKENLETLGGMSSISSEGTTHSVRLEEQLAFSDWINSNL 140
            :.|||.|:..:|:||:|..||:..:|:::.:.:.||.|.||||||.||...||::||.:|:|..|
Zfish   108 SFEEFVAISQELRSKEVRETFRKCISRRDGIRSFGGTSGISSEGTQHSYSDEEKVAFVNWVNKAL 172

  Fly   141 GHDKDLQHLLPIDSEGKRLYLSIKDGILLCKIINHSCPDTIDERAINKKNLTVYREFENLTLALV 205
            .:|.|.:||:|:|.....|:.|:||||||||:||.|.|||||||.|||| .|.:...|||.|||.
Zfish   173 ANDPDCKHLIPMDPGTDSLFKSVKDGILLCKMINLSQPDTIDERVINKK-CTPFTMTENLMLALN 236

  Fly   206 SSQAIGCNIVNIDAHDLAKGKPHLVLGLLWQIIRIGLFSHITLDSCPGLAGLLFDNERLEDLMKM 270
            |:.||||.:|||||.|:..|.||||||||||||:||||:.|.:.....|..||.::|.|:.||.|
Zfish   237 SASAIGCTVVNIDAQDMKAGTPHLVLGLLWQIIKIGLFADIEISRNEALIALLDESEELDHLMSM 301

  Fly   271 SPEAILLRWVNHHLERAGISRRCTNFQSDIVDSEIYSHLLKQIAGND-------ADVNLDALRES 328
            |||.:||||||:||:.|| .::..||..||.||..|.|||.||:...       .|:::..|.|.
Zfish   302 SPEDLLLRWVNYHLKAAG-WKQIRNFSEDIKDSRAYFHLLNQISPKGDLDDQMRIDIDMLGLTER 365

  Fly   329 DLQSRAEIMLQQAAKLNCRSFLTPQDVVNGVYKLNLAFVANLFNNHPGLDKPEQ------IEGLE 387
            |.:.|||:||:|||:|:||.|:||:|||.|.:|||:||||||||.:|.|::|..      |||  
Zfish   366 DDEMRAELMLRQAARLDCRQFVTPKDVVAGNHKLNMAFVANLFNMYPALNRPTDNGIDYAIEG-- 428

  Fly   388 SIEETREEKTYRNWMNSMGVAPHVNWLYSDLADGLVIFQLFDVIK-PGIVNWSRVHKRFSP-LRK 450
               ||||::|:||||||:||:|:||.|||||.|||:|.||::.|: |  |:|.||:|...| |..
Zfish   429 ---ETREDRTFRNWMNSLGVSPYVNHLYSDLHDGLIILQLYERIQIP--VDWPRVNKPPYPVLGS 488

  Fly   451 FMEKLENCNYAVDLG-KQLKFSLVGIAGQDLNDGNATLTLALIWQLMRAYTLSILSRLANTGNPI 514
            .|:|||||||||.|| |:.|||||||.|:::|:|:...||||:|||||.|||.:||.|.: |..:
Zfish   489 NMKKLENCNYAVALGKKEAKFSLVGIGGENINEGSPMHTLALVWQLMRRYTLKVLSDLGD-GEKV 552

  Fly   515 IEKEIVQWVNNRLSEAGKQSQLRNFNDPAIADGKIVIDLIDAIKEGSINYELVRTSG-TQEDNLA 578
            .::.|:.|||:.|.:..|.|.:.:|.|.:|:....||||||.|...:|.||:|::.. |.||.|.
Zfish   553 SDQIIINWVNSTLKQGDKNSSISSFKDKSISTSLPVIDLIDTIVPKAIKYEMVKSGDMTAEDKLN 617

  Fly   579 NAKYAISMARKIGARVYALPEDITEVKPKMVMTVFACMM 617
            |||||||:|||||.:|||||:|:.|||||||||||||:|
Zfish   618 NAKYAISVARKIGVKVYALPDDLVEVKPKMVMTVFACLM 656

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FimNP_728074.1 EF-hand_7 27..84 CDD:290234 17/56 (30%)
EFh 27..80 CDD:298682 14/52 (27%)
CH 127..237 CDD:278723 65/109 (60%)
CH 271..370 CDD:278723 54/105 (51%)
CH 396..497 CDD:214479 62/103 (60%)
CH 517..619 CDD:214479 57/102 (56%)
pls1XP_017213221.1 SAC6 35..656 CDD:227401 315/622 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170587941
Domainoid 1 1.000 140 1.000 Domainoid score I4702
eggNOG 1 0.900 - - E2759_KOG0046
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 599 1.000 Inparanoid score I923
OMA 1 1.010 - - QHG54335
OrthoDB 1 1.010 - - D138895at33208
OrthoFinder 1 1.000 - - FOG0000930
OrthoInspector 1 1.000 - - otm25149
orthoMCL 1 0.900 - - OOG6_101115
Panther 1 1.100 - - LDO PTHR19961
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X500
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.770

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