DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fim and Lcp1

DIOPT Version :9

Sequence 1:NP_728074.1 Gene:Fim / 32721 FlyBaseID:FBgn0024238 Length:641 Species:Drosophila melanogaster
Sequence 2:NP_001234913.1 Gene:Lcp1 / 18826 MGIID:104808 Length:627 Species:Mus musculus


Alignment Length:623 Identity:335/623 - (53%)
Similarity:422/623 - (67%) Gaps:31/623 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 EFKQNLEELIPNLDANKDGFIDLHELKDALNQVGFKLAGYQVREMIDEYKGKQLTAFQGKLNLEE 79
            |....|.|....:|.:.:|:|..:||.|........|.||:|||:.:...........||::.:|
Mouse     9 EEMMELREAFAKVDTDGNGYISCNELNDLFKAACLPLPGYRVREITENLMATGDLDQDGKISFDE 73

  Fly    80 FEALCLDLKSKDVASTFKTVVSKKENLETLGGMSSISSEGTTHSVRLEEQLAFSDWINSNLGHDK 144
            |..:...|||.:||.||:..::|||.:..:||.|..||.||.||...||:.||.:|||..|.:|.
Mouse    74 FIKVFHGLKSTEVAKTFRKAINKKEGICAIGGTSEQSSVGTQHSYSEEEKYAFVNWINKALENDP 138

  Fly   145 DLQHLLPIDSEGKRLYLSIKDGILLCKIINHSCPDTIDERAINKKNLTVYREFENLTLALVSSQA 209
            |.:|::|::.....|:.::.|||:|||:||.|.|||||||.||||.||.:...|||.|||.|:.|
Mouse   139 DCRHVIPMNPNTDDLFNAVGDGIVLCKMINLSVPDTIDERTINKKKLTPFTIQENLNLALNSASA 203

  Fly   210 IGCNIVNIDAHDLAKGKPHLVLGLLWQIIRIGLFSHITLDSCPGLAGLLFDNERLEDLMKMSPEA 274
            |||::|||.|.||.:|||:||||||||:|:||||:.|.|.....|..||.:.|.||||||:|||.
Mouse   204 IGCHVVNIGAEDLKEGKPYLVLGLLWQVIKIGLFADIELSRNEALIALLREGESLEDLMKLSPEE 268

  Fly   275 ILLRWVNHHLERAGISRRCTNFQSDIVDSEIYSHLLKQIA--GNDAD-----VNLDALRESDLQS 332
            :||||.|:|||.||.: :.|||.:||.||:.|.|||:|:|  |::..     :::..|||.|...
Mouse   269 LLLRWANYHLENAGCT-KITNFSTDIKDSKAYYHLLEQVAPKGDEEGIPAVVIDMSGLREKDDIQ 332

  Fly   333 RAEIMLQQAAKLNCRSFLTPQDVVNGVYKLNLAFVANLFNNHPGLDKPEQ-------IEGLESIE 390
            |||.|||||.:|.||.|:|..|||.|..||||||:|||||.:|.|.|||.       :||     
Mouse   333 RAECMLQQAERLGCRQFVTATDVVRGNPKLNLAFIANLFNKYPALHKPENQDIDWGALEG----- 392

  Fly   391 ETREEKTYRNWMNSMGVAPHVNWLYSDLADGLVIFQLFDVIK-PGIVNWSRVHKRFSPLRKF--- 451
            |||||:|:||||||:||.|.||.|||||:|.||||||::.|| |  |:|:||:|  .|..|.   
Mouse   393 ETREERTFRNWMNSLGVNPRVNHLYSDLSDALVIFQLYEKIKVP--VDWNRVNK--PPYPKLGGN 453

  Fly   452 MEKLENCNYAVDLGK-QLKFSLVGIAGQDLNDGNATLTLALIWQLMRAYTLSILSRLANTGNPII 515
            |:||||||||||||| |.|||||||||||||:||.||||||:|||||.|||:||..:.. |..:.
Mouse   454 MKKLENCNYAVDLGKNQAKFSLVGIAGQDLNEGNRTLTLALVWQLMRRYTLNILEDIGG-GQKVN 517

  Fly   516 EKEIVQWVNNRLSEAGKQSQLRNFNDPAIADGKIVIDLIDAIKEGSINYELVRTSG-TQEDNLAN 579
            :..||.|||..|.||.|.|.:.:|.||.|:....|:||||||:.|||||:|::|.. ..|:.|.|
Mouse   518 DDIIVNWVNTTLKEAQKSSSIASFKDPKISTSLPVLDLIDAIQPGSINYDLLKTENLDDEEKLNN 582

  Fly   580 AKYAISMARKIGARVYALPEDITEVKPKMVMTVFACMM 617
            |||||||||||||||||||||:.||.||||||||||:|
Mouse   583 AKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLM 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FimNP_728074.1 EF-hand_7 27..84 CDD:290234 16/56 (29%)
EFh 27..80 CDD:298682 14/52 (27%)
CH 127..237 CDD:278723 62/109 (57%)
CH 271..370 CDD:278723 55/105 (52%)
CH 396..497 CDD:214479 73/105 (70%)
CH 517..619 CDD:214479 65/102 (64%)
Lcp1NP_001234913.1 EFh 13..79 CDD:238008 18/65 (28%)
CH_PLS_rpt1 98..242 CDD:409141 79/143 (55%)
Actin-binding 1 106..379 148/273 (54%)
CH_PLS2_rpt2 251..375 CDD:409176 68/124 (55%)
CH_SF 374..507 CDD:412120 90/141 (64%)
Actin-binding 2 380..624 155/251 (62%)
CH_PLS2_rpt4 511..625 CDD:409182 66/111 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167843048
Domainoid 1 1.000 146 1.000 Domainoid score I4517
eggNOG 1 0.900 - - E2759_KOG0046
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H80174
Inparanoid 1 1.050 611 1.000 Inparanoid score I913
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54335
OrthoDB 1 1.010 - - D138895at33208
OrthoFinder 1 1.000 - - FOG0000930
OrthoInspector 1 1.000 - - otm42714
orthoMCL 1 0.900 - - OOG6_101115
Panther 1 1.100 - - LDO PTHR19961
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2112
SonicParanoid 1 1.000 - - X500
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.800

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