DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fim and Pls1

DIOPT Version :9

Sequence 1:NP_728074.1 Gene:Fim / 32721 FlyBaseID:FBgn0024238 Length:641 Species:Drosophila melanogaster
Sequence 2:NP_001028382.1 Gene:Pls1 / 102502 MGIID:104809 Length:630 Species:Mus musculus


Alignment Length:622 Identity:329/622 - (52%)
Similarity:428/622 - (68%) Gaps:27/622 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 QEFKQNLEELIPNLDANKDGFIDLHELKDALNQVGFKLAGYQVREMIDEYKGKQLTAFQGKLNLE 78
            :|..:.|:|....:|.:..|::..:||:|...:....|.||:|||::::..........||::.|
Mouse    10 REELEELQEAFNKIDIDNSGYVSDYELQDLFKEASLPLPGYKVREIVEKILVVADNNKDGKISFE 74

  Fly    79 EFEALCLDLKSKDVASTFKTVVSKKENLETLGGMSSISSEGTTHSVRLEEQLAFSDWINSNLGHD 143
            ||.:|..:|||||::.||:.:::|:|.:..:||.||||||||.||...||::||.:|||..|.:|
Mouse    75 EFVSLMQELKSKDISKTFRKIINKREGITAIGGTSSISSEGTQHSYSEEEKVAFVNWINKALEND 139

  Fly   144 KDLQHLLPIDSEGKRLYLSIKDGILLCKIINHSCPDTIDERAINKKNLTVYREFENLTLALVSSQ 208
            .|..||||::.....|:.|:.|||||||:||.|.||||||||||||.||.:...|||.|||.|:.
Mouse   140 ADCSHLLPMNPNDGSLFKSLADGILLCKMINLSEPDTIDERAINKKKLTPFTVSENLNLALNSAS 204

  Fly   209 AIGCNIVNIDAHDLAKGKPHLVLGLLWQIIRIGLFSHITLDSCPGLAGLLFDNERLEDLMKMSPE 273
            ||||.:|||.|.||.:||||||||||||||::|||:.|.:.....|..||.|.|.||:|||:|||
Mouse   205 AIGCTVVNIGAQDLKEGKPHLVLGLLWQIIKVGLFADIEISRNEALIALLKDGEDLEELMKLSPE 269

  Fly   274 AILLRWVNHHLERAGISRRCTNFQSDIVDSEIYSHLLKQIA-------GNDADVNLDALRESDLQ 331
            .:||||||:||..|| .|...||..||.||:.|.|||.|||       |....::|....|.:..
Mouse   270 ELLLRWVNYHLTNAG-WRTINNFSQDIKDSKAYFHLLNQIAPKGDRDDGPAVAIDLSGFNEKNDL 333

  Fly   332 SRAEIMLQQAAKLNCRSFLTPQDVVNGVYKLNLAFVANLFNNHPGLDKPEQ-------IEGLESI 389
            .||..|||:|.||.||.|:||.|||:|..||||||||||||.:|.|.||:.       :||    
Mouse   334 KRAGFMLQEADKLGCRQFVTPADVVSGNPKLNLAFVANLFNTYPCLHKPDNNDIDLNLLEG---- 394

  Fly   390 EETREEKTYRNWMNSMGVAPHVNWLYSDLADGLVIFQLFDVIK-PGIVNWSRVHK-RFSPLRKFM 452
             |::||:|:||||||:||.|::|.|||||||.||||||:::|: |  ||||:|:| .:..|...|
Mouse   395 -ESKEERTFRNWMNSLGVNPYINHLYSDLADALVIFQLYEMIRVP--VNWSQVNKPPYPALGGNM 456

  Fly   453 EKLENCNYAVDLGK-QLKFSLVGIAGQDLNDGNATLTLALIWQLMRAYTLSILSRLANTGNPIIE 516
            :|:|||||||:||| :.|||||||||||||:|||||||||:|||||.|||.:||.|.. |..:.:
Mouse   457 KKIENCNYAVELGKNEAKFSLVGIAGQDLNEGNATLTLALVWQLMRRYTLKVLSDLGE-GEKVTD 520

  Fly   517 KEIVQWVNNRLSEAGKQSQLRNFNDPAIADGKIVIDLIDAIKEGSINYELV-RTSGTQEDNLANA 580
            ..|::|||..|..|.|.:.:.:|.|.:|:....|:||||||...::..|:: |...|.||.|.||
Mouse   521 DIIIKWVNQTLKSANKSTSISSFKDKSISTSLPVLDLIDAIAPNAVRQEMIKREHLTDEDKLNNA 585

  Fly   581 KYAISMARKIGARVYALPEDITEVKPKMVMTVFACMM 617
            |||||:|||||||:||||:|:.|||||||||||||:|
Mouse   586 KYAISVARKIGARIYALPDDLVEVKPKMVMTVFACLM 622

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FimNP_728074.1 EF-hand_7 27..84 CDD:290234 16/56 (29%)
EFh 27..80 CDD:298682 14/52 (27%)
CH 127..237 CDD:278723 68/109 (62%)
CH 271..370 CDD:278723 55/105 (52%)
CH 396..497 CDD:214479 70/103 (68%)
CH 517..619 CDD:214479 56/102 (55%)
Pls1NP_001028382.1 SAC6 13..622 CDD:227401 327/617 (53%)
Actin-binding 1 108..381 156/273 (57%)
Actin-binding 2 382..626 141/249 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167843050
Domainoid 1 1.000 146 1.000 Domainoid score I4517
eggNOG 1 0.900 - - E2759_KOG0046
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 611 1.000 Inparanoid score I913
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54335
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000930
OrthoInspector 1 1.000 - - otm42714
orthoMCL 1 0.900 - - OOG6_101115
Panther 1 1.100 - - LDO PTHR19961
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X500
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.760

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