DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8915 and ythdc2

DIOPT Version :9

Sequence 1:NP_001285369.1 Gene:CG8915 / 32715 FlyBaseID:FBgn0030833 Length:976 Species:Drosophila melanogaster
Sequence 2:XP_021332046.1 Gene:ythdc2 / 567114 -ID:- Length:1381 Species:Danio rerio


Alignment Length:1147 Identity:319/1147 - (27%)
Similarity:502/1147 - (43%) Gaps:293/1147 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 GGPK---GTGKQKTRPGKNAKADAGDKLKSEDEKMLRQLVDDFLQSCEPEKQLP-GLTKAQRSHV 97
            ||.|   .:.||.......||.....::..|.:..:...::.|..|.|.|...| .||.::|:.:
Zfish     4 GGQKSNMSSSKQHQASSLKAKGFRDIRIDEEVKIAVNIALERFQYSDEKELDFPSSLTNSERAFI 68

  Fly    98 HRLAQHRGLKTVSKGPEENRVLFISRPQS-DGQQQYILCNTKLDICPPLLDVL-----------G 150
            |||||..|..:.|:|...:|.|.:.:... :.|:..:.|:.. ..|..|:..|           .
Zfish    69 HRLAQSLGYISKSRGKGCSRFLTVRKKDGMEAQRSSMSCSLS-PSCRALVQSLMQRFPISSRERS 132

  Fly   151 QMAGNVERRLMNSVGDLKCNKQQYKDIRLPSNFGLVGQRLIPPPQSNRNRNIQHERRSLPIYKQR 215
            |:..:.||.| .|..|...:|.:... ||......|      ||:.:....:...|::||:|:.:
Zfish   133 QLQPHAERGL-QSPPDTTDSKSRTSG-RLSHGIPQV------PPRRSSAPELDAFRKALPVYELQ 189

  Fly   216 ESILNVLQRDQVLIIKGATGSGKSTQLPQYILEWAAEHRAPVRIVVSQPRRIAAISVSERISKER 280
            |.|:..::..||:::.|.|||||:||:||::|:..:...:|.||..:||||:|.|:|:||::.||
Zfish   190 EQIIQSIRDHQVVLVLGETGSGKTTQIPQFLLDDCSATASPCRIFCTQPRRLATIAVAERVAAER 254

  Fly   281 GEAPGTTVGYNIRMNRQCSSNTVLMLTTSGCLLRALAMDKKSFFKNTTHLIIDEAHERDLDTDFL 345
            ||..|.||||.||:..:.|..|:|...|||.|||.| |.........||:|:||.||||..||||
Zfish   255 GENIGQTVGYQIRLESRVSPKTLLTFCTSGVLLRTL-MAGDEALSTVTHVIVDEVHERDGLTDFL 318

  Fly   346 LLATKLELQKNPHLRLVLMSATMDLEALSNYFGGGTVMDVEGRSFEVSIYHLEDILSKTGYMHPR 410
            |...|..|||.|:|||||.||.:|:.....|||...|:.::|..:||....|||||..|.|.:..
Zfish   319 LTKMKEVLQKMPNLRLVLSSAALDVSLFMRYFGSCPVIHIKGCPYEVKQLFLEDILRSTAYTNKD 383

  Fly   411 MEKFL---------------------------GKPT----------------------------- 419
            |.|:.                           .:||                             
Zfish   384 MIKYKKEAQKEESQQCSLSEWCERDVPQADPPERPTVCVLQDNQLLDDGGDSVFSQMSEKDVSSL 448

  Fly   420 ----------------------------------------------------------------- 419
                                                                             
Zfish   449 EPWLLREMDSCISSIFLNQDADAFTQLFNLILNENISVDYRHSETSATALMVSAGRGFVSHTEQL 513

  Fly   420 -----------------------GKETPS----------------------------------EL 427
                                   .|:|.:                                  ||
Zfish   514 LNMGANINIKASNGWTALDWAKHFKQTEAVDLLESHIWCAEASPQDEASLLQNSSCELSCEDQEL 578

  Fly   428 LAAYYGGNTIVHPDIDNDLIVSLLELLLRQGDAGAVIVYLPGYSDMTSLLARLESSLPREQI--- 489
            |.||:  ::.....:|..||:.||..:.:..|.|||:::||||.::.||         |:||   
Zfish   579 LKAYH--HSFDDEKVDLQLILHLLHSICQSSDQGAVLIFLPGYDEIVSL---------RDQILFD 632

  Fly   490 -----------TIILLHSQVDNSEQRKVFRTYP-GVRLKIILSTNIGQTSITIPDLLYVIDTGLA 542
                       .:.:|||.:..|:|:||.::.| ||| ||||||||.:||||:.|:::|||:|..
Zfish   633 DKRFTEHQQRFQVFVLHSSMQTSDQKKVLKSTPKGVR-KIILSTNIAETSITVSDVVFVIDSGKV 696

  Fly   543 KMKTYDSTIDASQLTLTWISQADAKQRAGRAGRVCHGNCYRLYDNDRMARMNLYTIPEIMRRTLD 607
            |.|.||:..:.:.|.:.|||:|.|.||.|||||...|.|:.|:...|.:.|..:.||:::|..|.
Zfish   697 KEKAYDALNNVTMLKMVWISKASALQRKGRAGRCRPGVCFHLFSRLRFSNMLEHQIPQLLRMPLQ 761

  Fly   608 EICLLTKLAAP-DKKIENFLALALDTPPKDAVMQSCSRLKLLGVLDERDEVTPLGHIVAELPLGV 671
            |:||.|||.|| :..:..||:.|.:.|..:.|..:...||.:..:|..:.:|.||..:|:||:..
Zfish   762 ELCLHTKLLAPINCPVAEFLSRAPEPPHINTVKHAVQMLKTIDAMDPWENLTELGLHLADLPVEP 826

  Fly   672 QIGKCLVYSIYLRCLDSMIIIAAYHSVRDPFVLNIERGKKSGQQISRVLFAGDGMSDSLAVIKLY 736
            .:||.::.::.|:|||.::.||...:.|:||||..:..::....:.|..|..:..||.:|:::.:
Zfish   827 HLGKMVLCAVVLKCLDPVLTIACTLAHREPFVLPAQAAQRRVAMLCRRRFTANTFSDHMALLRAF 891

  Fly   737 EEFTNLKRKDIG---DFCERNFICRNAMEMFVSAASTLRDTVYRIFRFSEA----SARLASSFNN 794
            :.:.  |.:..|   .|||:||:.:..||:.||..:.|...: |...|..|    ..|..:..:.
Zfish   892 QAWQ--KARSDGWERAFCEKNFLSQATMEIIVSMRTQLLGQL-RATGFVRARGGGDIRDVNQNSE 953

  Fly   795 DTNMIRLALTAGLYPKLAYMDRENKNQLVAEGDPLVQVSRSSCLRGKKKQK------------DL 847
            :..:::.||.||:||.|.:.|..:   |..|.:..|::..:|.|...:.:|            .|
Zfish   954 NWAVVKAALVAGMYPNLIHRDGLS---LSGEKEKKVRLHPTSVLSQPQYKKIPPANGQAAAVDSL 1015

  Fly   848 ASEWILFVEKTRTADQISSLEHTTLVSGLMVALAGG--------------KRFITEAHGSEM--- 895
            .::|:::.|.|| |.:|:|:...|.|:.|.:||.||              :|...::..||:   
Zfish  1016 PTDWLIYDEMTR-AHRIASVRCCTAVTPLTIALFGGGAKLPSSALQEAVLQRGSADSSDSEVEDQ 1079

  Fly   896 ------LLCLDSWIRLKCPAE-----FGLQ-------LHKVR 919
                  .|.||.||..:...|     |||:       |.::|
Zfish  1080 CSARQAHLTLDHWINFRLDPETAELVFGLRQRWQSVFLRRIR 1121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8915NP_001285369.1 R3H 64..123 CDD:100064 19/59 (32%)
DEXDc 214..395 CDD:214692 83/180 (46%)
DEXDc 226..368 CDD:238005 73/141 (52%)
HELICc 479..575 CDD:197757 46/110 (42%)
HA2 648..733 CDD:214852 25/84 (30%)
OB_NTP_bind 783..884 CDD:285018 31/130 (24%)
ythdc2XP_021332046.1 R3H_DEXH_helicase 36..94 CDD:100077 18/57 (32%)
HrpA 169..>1001 CDD:224557 246/850 (29%)
ANK repeat 496..524 CDD:293786 0/27 (0%)
YTH 1248..1379 CDD:309322
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48010
OrthoDB 1 1.010 - - D222681at33208
OrthoFinder 1 1.000 - - FOG0000258
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_106429
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3857
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.830

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