DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment baz and LNX1

DIOPT Version :9

Sequence 1:NP_001036283.1 Gene:baz / 32703 FlyBaseID:FBgn0000163 Length:1520 Species:Drosophila melanogaster
Sequence 2:NP_001119800.1 Gene:LNX1 / 84708 HGNCID:6657 Length:728 Species:Homo sapiens


Alignment Length:790 Identity:176/790 - (22%)
Similarity:277/790 - (35%) Gaps:249/790 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 HTYKVAAKQEGIPHGQLHKSYSLTLPKRPPSPSTYSCVKPDSWVTVTHLQTQSGILDPDDCVRDV 87
            |.::.:.|  |..|      |.||..::..|..  .|  ||...::|       ...|...|...
Human   122 HHFQTSCK--GASH------YGLTKDRKRRSQD--GC--PDGCASLT-------ATAPSPEVSAA 167

  Fly    88 ADDREQILAHFDDPGPD-PGVPQGGGDGASGSSSVGTGSPDIFRDPTNTEAPTCPRDLSTPHIEV 151
            |    .|....|:||.| |.......||....|.|.:|..:      .|.|.  |.:.||     
Human   168 A----TISLMTDEPGLDNPAYVSSAEDGQPAISPVDSGRSN------RTRAR--PFERST----- 215

  Fly   152 TSTTSGPMAGLGVGLMVRRSSDPNLLASLKAEGSNKRWSAAAPHYAGG-------DSPE---RLF 206
                            :|..|...:..:|......|..||.|.|...|       .:||   ||:
Human   216 ----------------IRSRSFKKINRALSVLRRTKSGSAVANHADQGRENSENTTAPEVFPRLY 264

  Fly   207 LDKAGGQLSPQWEEDDDPSHQLKEQLLHQQQPHAANGGSSSGNHQP--------------FARSG 257
            .....|:::.......|||..|..:|:         |||.:    |              .||.|
Human   265 HLIPDGEITSIKINRVDPSESLSIRLV---------GGSET----PLVHIIIQHIYRDGVIARDG 316

  Fly   258 RL----------SMQFLGDGNGYKWMEAAEKLQNQPPAQQTYQQGSHHAGHGQNGAYSSKSLPRE 312
            ||          .|......:.|     |.:|..| |.|..:                 .::.||
Human   317 RLLPGDIILKVNGMDISNVPHNY-----AVRLLRQ-PCQVLW-----------------LTVMRE 358

  Fly   313 SK-RKEPLGQAYESIREKDGEMLLIINEYGSP---LGLTALPDKEHGGGLLVQHVEPGSRAERGR 373
            .| |....|||.::.|.:|....:|:|: .||   ||:..:...:..|..:...::.|.....|:
Human   359 QKFRSRNNGQAPDAYRPRDDSFHVILNK-SSPEEQLGIKLVRKVDEPGVFIFNVLDGGVAYRHGQ 422

  Fly   374 LRRDDRILEINGIKL-IGLTESQVQEQLRRALESSELRVRVLRGDRNRRQQRD-SKVAEMVEVAT 436
            |..:||:|.|||..| .|..||..     ..:::||.||.::...:.|::..| .:.|......:
Human   423 LEENDRVLAINGHDLRYGSPESAA-----HLIQASERRVHLVVSRQVRQRSPDIFQEAGWNSNGS 482

  Fly   437 VSP-------TRKPHAAPVGTSLQVANTRKLGRKIEIMLKKGP-NGLGFSVTTRDNPAGG----- 488
            .||       |.||....:....:|.|           ::|.| ..||.:|      |||     
Human   483 WSPGPGERSNTPKPLHPTITCHEKVVN-----------IQKDPGESLGMTV------AGGASHRE 530

  Fly   489 -HCPIYIKNILPRGAAIEDGRLKPGDRLLEVDGTPMTGKTQTDVVAILRGMPAGATVRIVVSRQQ 552
             ..|||:.::.|.|....|||:|.||.||.|||..:|..::::.||:|:...:...::.:..::.
Human   531 WDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKEY 595

  Fly   553 ELAEQADQPAEKSAGVAVAPSVAPPAVPAAAAPAPPIPVQKSSSARSLFTHQQQSQLNESQHFID 617
            |..|....||                                                       
Human   596 EPQEDCSSPA------------------------------------------------------- 605

  Fly   618 AGSESAASNDSLPPSSNSWHSREELTLHIP--VHDTEKAGLGVSVKGKTCSNL----NASGSSAS 676
                :..||.::.|.|: |.....:.|.:|  :::              |.::    |.:||...
Human   606 ----ALDSNHNMAPPSD-WSPSWVMWLELPRCLYN--------------CKDIVLRRNTAGSLGF 651

  Fly   677 SGSNGLMKHDGDLGIFVKNVIHGGAASRDGRLRMNDQLLSVNGVSLRGQNN---AEAMETLRRAM 738
            ....|..:::|:...|:|:::.|..|..|||:|..|.||:|||.|..|..:   |..::.|:..:
Human   652 CIVGGYEEYNGNKPFFIKSIVEGTPAYNDGRIRCGDILLAVNGRSTSGMIHACLARLLKELKGRI 716

  Fly   739 VNTPGKHPGT 748
            ..|....|||
Human   717 TLTIVSWPGT 726

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bazNP_001036283.1 DUF3534 <62..174 CDD:288873 24/112 (21%)
PDZ_signaling 341..412 CDD:238492 21/74 (28%)
CRS1_YhbY <390..>436 CDD:294440 10/46 (22%)
PDZ_signaling 462..548 CDD:238492 28/92 (30%)
PDZ_signaling <686..753 CDD:238492 23/66 (35%)
LNX1NP_001119800.1 mRING-HC-C3HC3D_LNX1 38..79 CDD:319693
modified RING-HC finger (C3HC3D-type) 41..78 CDD:319693
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..214 11/43 (26%)
NPXY motif 181..184 1/2 (50%)
Interaction with MAGEB18. /evidence=ECO:0000269|PubMed:20864041 186..244 17/86 (20%)
PDZ_signaling 272..355 CDD:238492 21/118 (18%)
PDZ_signaling 380..460 CDD:238492 24/85 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 475..494 3/18 (17%)
PDZ_signaling 505..588 CDD:238492 30/99 (30%)
PDZ_signaling 637..721 CDD:238492 24/83 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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