DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment baz and pard3

DIOPT Version :9

Sequence 1:NP_001036283.1 Gene:baz / 32703 FlyBaseID:FBgn0000163 Length:1520 Species:Drosophila melanogaster
Sequence 2:XP_004915520.1 Gene:pard3 / 733833 XenbaseID:XB-GENE-490065 Length:1370 Species:Xenopus tropicalis


Alignment Length:1617 Identity:419/1617 - (25%)
Similarity:610/1617 - (37%) Gaps:514/1617 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 PDSWVTVTHLQ-TQSGILDPDDCVRDVADDREQILAHFDDPGPDPGVPQGGGDGASGSSSVGTGS 125
            |..|:.|..|: ...||||.||.:.|||||:::::|.:|:..     |..||||.| :||.||.|
 Frog    42 PGYWIQVHRLEHGDGGILDLDDILCDVADDKDRLVAIYDEQD-----PHHGGDGTS-ASSTGTQS 100

  Fly   126 PDIFRDP--TNTEAPTCPRDLSTPHIEVTSTTSGPMAGLGVGLMVRRSSDPNLLASLKA------ 182
            |:||...  ||:.:...|...:: .||||.:    :....:.|.|||||||.|:....:      
 Frog   101 PEIFGSELGTNSMSAFQPYQAAS-EIEVTPS----VLRANMPLHVRRSSDPALVGITTSVSDSNF 160

  Fly   183 ---EGSNK---RWSAAAPHYAGGDSPERLFLDK--AGGQLSPQWEEDDDPSHQLKEQLLHQQQPH 239
               |.|.|   |||..|.           |..|  :.|..:.:.::|::.....::.....:|..
 Frog   161 TSEEPSRKNPTRWSTTAG-----------FTKKNTSAGMGASEIKKDENYRSLPRDTSNWSKQFQ 214

  Fly   240 AANGGSSSGNHQPFARSGRLSMQFLGDGNGYKWMEAAEKLQNQPPAQQTYQQGSHHAGHGQNGAY 304
            ..|..||.....|...:               |:|..|  |::..|:                  
 Frog   215 RDNARSSLSASHPLVDT---------------WLERQE--QDEEEAE------------------ 244

  Fly   305 SSKSLPRESKRKEPLGQA------YESIREKDGEMLLIINEYGSPLGLTALPDKEHGG---GLLV 360
                   |:.|.||:|.|      ..|....|...|:.::..|.|||:..:|....||   ||||
 Frog   245 -------ENSRVEPVGHADTGLERTSSFSLDDMVKLVEVSNDGGPLGIHVVPYSARGGRTLGLLV 302

  Fly   361 QHVEPGSRAERGRL-RRDDRILEINGIKLIGLTESQVQEQLRRALESSELRVRVL---------- 414
            :.:|.|.:|||..| ..:|.|:.||...|......|.|...|:|:.|..:...|:          
 Frog   303 KRLEKGGKAERENLFHENDCIVRINNGDLRNRRFEQAQNMFRQAMRSPIIWFHVVPAANKEPYEQ 367

  Fly   415 --RGDRN----------------------------RRQQRDSKVAEMVE-----VATVSPTRKPH 444
              :.:.|                            :|..|.|..|:.::     ..:::...|| 
 Frog   368 LSQSENNSYYSSQHVHDSQYMDSRSFSSPGPDHTAQRMPRQSSQADPMDSYSHLPQSINSAGKP- 431

  Fly   445 AAPVG--TSLQVA---------NTRKLGRKIEIMLKKGPNGLGFSVTTRDNPAGGHCPIYIKNIL 498
              |.|  ||.|.|         .|:| |:|..|.||||..|||||:|:||.|.||..|||:||||
 Frog   432 --PTGLTTSPQRAVSPPTNSAYGTKK-GKKFYIQLKKGAEGLGFSITSRDVPLGGSAPIYVKNIL 493

  Fly   499 PRGAAIEDGRLKPGDRLLEVDGTPMTGKTQTDVVAILRGMPAGATVRIVVSRQQELAEQADQPAE 563
            ||||||:|||:|.|||||||:|..:||:||.:||::||....|..|.::|.||.|...       
 Frog   494 PRGAAIQDGRMKAGDRLLEVNGVDLTGRTQEEVVSLLRSTKMGGAVNLLVLRQDETFH------- 551

  Fly   564 KSAGVAVAPSVAPPAVPAAAAPAPPIPVQKSSSARSLFTHQQQSQLNESQHFIDAGSESAASNDS 628
                            |....|.|    .:.|:||...|.:::..|.                  
 Frog   552 ----------------PRELNPEP----SQVSNARETKTEEEELVLT------------------ 578

  Fly   629 LPPSSNSWHSREELTLHIPVHDTEKAGLGVSVKGKTCSNLNASGSSASSGSNGLMKHDGDLGIFV 693
              |..    :||.||..||::|:..|||||||||                 |...::..||||||
 Frog   579 --PDG----TREFLTFEIPLNDSGSAGLGVSVKG-----------------NRSKENHADLGIFV 620

  Fly   694 KNVIHGGAASRDGRLRMNDQLLSVNGVSLRGQNNAEAMETLRRAMVNTPGKHPGTITLLVGRKIL 758
            |::|:|||||:|||||:||||::|||.||.|:.|.:||||||::| :|.|...|.|.|:|.|:|.
 Frog   621 KSIINGGAASKDGRLRVNDQLVAVNGESLLGKTNQDAMETLRKSM-STEGNRRGMIQLIVARRIK 684

  Fly   759 RSASSSDILDHSNSHSHSHSNSSGGSNSNGSGNNNNSSSNASDNSGATVIYLSPEKREQRCNGGG 823
            ||                                 ...|..|.:.....|....:.||:|.:...
 Frog   685 RS---------------------------------ELESPGSPSGPELPIETMLDDRERRISHSL 716

  Fly   824 GGGSAGNEMNRWSNPVLDRLTGGICSSNSAQPSSQQSHQQQPHPSQQQQQQRRLPAAPVCSSAAL 888
            ..|..|.:.:...|..|:|:.|              .:|..|..:..|                 
 Frog   717 YSGIEGFDESPTRNAALNRIMG--------------KYQLSPTVNMPQ----------------- 750

  Fly   889 RNESYYMATNDNWSPAQMHLMTAHGNTALLIEDDAEPMSPTLPAR--------PHDGQHCNTSSA 945
                                     :..::||||   .:|.|||:        .||...|.|.|.
 Frog   751 -------------------------DDTVIIEDD---RTPVLPAQLSDHSSSSSHDDVGCVTDST 787

  Fly   946 NP-SQNLAVGNQGPPINTVPGTPSTSSNFDATYSSQLSLETNSGVEHFSRDALGRRSISEKHHAA 1009
            :. |:.:|             :.||.|.........|:         |.|:..||:|:|||....
 Frog   788 SAWSKTVA-------------SESTESTLSPDMDPSLA---------FQREGFGRQSMSEKRTKQ 830

  Fly  1010 L-DARETGTYQRNKKLREERERERRIQLTKSAVYGGSIESLTARIASANAQFSGYKHAKTASSIE 1073
            . ||.:....    |.|:.:..:.....||.:...|......:|                     
 Frog   831 FGDASQLDFV----KTRKSKSMDLVADETKISAMAGQNSGSPSR--------------------- 870

  Fly  1074 QRETQQQLAAAEAEARDQLGDLGPSLGMKKSSSLESLQTMVQELQMS-DEPRGHQALRAPRGRGR 1137
                                |:|||||:|||||||||||.|.|:.:: |.|......|..||||.
 Frog   871 --------------------DVGPSLGLKKSSSLESLQTAVAEVTLNGDIPFHRPRPRIIRGRGC 915

  Fly  1138 EDSLRAAV---------------------VSEPDASKPRKTWLLEDGD----------------H 1165
            .:|.|||:                     .||.:.......|:.||.:                |
 Frog   916 NESFRAAIDKSYDKPSADDDDEGMETCTNKSELEPINSSSEWVEEDTEESSKSGRESVSTASDQH 980

  Fly  1166 EGGFASQRNGPFQSSLN-----DGKHGCK-----SSRAKKPSILRGIGHMFRFGKNRKDGVVPVD 1220
            ......|.||......:     .||...|     .::|||..:|:|:|.||:|||:|||.     
 Frog   981 SHSLERQVNGSSHDKSDRKKDKSGKEKKKDRDKEKNKAKKGGMLKGLGDMFKFGKHRKDD----- 1040

  Fly  1221 NYAVNISPPTSVVSTATSPQLQQQQQQQLQQHQQQQQIPTAALAALERNGKPPAYQPPPPLPAPN 1285
                .|....|....|......:.::.:::|.|::.|..|..|.  ||..:...|.........:
 Frog  1041 ----KIDHGGSWKMRAQEAHPSEDERMRMRQEQERIQAKTRELR--ERQAREKDYAEIQDYAKTH 1099

  Fly  1286 G----------------VGSNGIHQNDIFNHRYQ---HYANYEDLHQQHQQHQISGGDSTTSISE 1331
            |                ..|..:|    .|:|.|   .....|.|:.|.::.:.|......|...
 Frog  1100 GSLDESPYAGAGLYDTCTNSGTLH----LNNRPQSPRDAKQTEALYAQVKKPRSSKPSPVDSNRS 1160

  Fly  1332 TLS-ESTLECMRQQVIRQRIKVEAESRRHQHYHSQ---------RSARSQDVSMHSTSSGSQPGS 1386
            |.| ...::.:||:..:.|.:.:.:.||..:...|         :|.|      ||.|...|   
 Frog  1161 TPSNHDRIQRLRQEFQQARQEDDVDERRRTYSFEQPWPNTPTYNQSGR------HSVSVEVQ--- 1216

  Fly  1387 LAQPQAQSNGVRPMSSYYEYETVQQQRVGSIKHSHSSSATSSSSSPINVPH--WKAAAMNGYSPA 1449
             .|.|.|.          |.|:.||     .:..:||....|..:|.:|..  |:.|    |.|.
 Frog  1217 -MQRQRQE----------ERESFQQ-----AQRQYSSLPRQSRKNPSSVSQDSWEQA----YPPG 1261

  Fly  1450 SLNSSARSRGPFVTQVTIREQSSG--GIPAHLLQQHQQQQLQQQQPTYQTVQKMSGP 1504
            ....||:....:.:....|....|  |..|.::.:.|:...|:|:...|.::|...|
 Frog  1262 EGFQSAKENPRYSSYQGSRNGYMGGHGFNARVMMETQELLRQEQRRKEQQLKKKVSP 1318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bazNP_001036283.1 DUF3534 <62..174 CDD:288873 44/114 (39%)
PDZ_signaling 341..412 CDD:238492 27/74 (36%)
CRS1_YhbY <390..>436 CDD:294440 11/90 (12%)
PDZ_signaling 462..548 CDD:238492 52/85 (61%)
PDZ_signaling <686..753 CDD:238492 41/66 (62%)
pard3XP_004915520.1 DUF3534 2..83 CDD:338230 17/40 (43%)
PDZ_signaling 271..346 CDD:238492 26/74 (35%)
PDZ 457..547 CDD:214570 54/89 (61%)
PDZ_signaling 592..680 CDD:238492 52/105 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 110 1.000 Domainoid score I6252
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 332 1.000 Inparanoid score I2388
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D387987at33208
OrthoFinder 1 1.000 - - FOG0002688
OrthoInspector 1 1.000 - - otm49430
Panther 1 1.100 - - O PTHR16484
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2449
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

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