DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment baz and Lnx1

DIOPT Version :9

Sequence 1:NP_001036283.1 Gene:baz / 32703 FlyBaseID:FBgn0000163 Length:1520 Species:Drosophila melanogaster
Sequence 2:NP_001153049.1 Gene:Lnx1 / 16924 MGIID:1278335 Length:728 Species:Mus musculus


Alignment Length:791 Identity:180/791 - (22%)
Similarity:273/791 - (34%) Gaps:253/791 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 RHTYKVAAKQEGIPHGQLHKSYSLTLPKRPPSPSTYSCVKPDSWVTVTHLQTQSGILDPDDCVRD 86
            :|.::.:.|  |..|      |.||..::                    .::|.|.  ||.|...
Mouse   125 QHHFQTSCK--GASH------YGLTKDRK--------------------RRSQDGC--PDGCASL 159

  Fly    87 VA-------DDREQILAHFDDPGPD-PGVPQGGGDGASGSSSVGTGSPDIFRDPTNTEAPTCPRD 143
            :|       .....|....|:||.| |.......||...::|..:|..:      .|.|.  |.:
Mouse   160 MATTLSPEVSAAATISLMTDEPGLDNPAYVSSVEDGEPVANSSDSGRSN------RTRAR--PFE 216

  Fly   144 LSTPHIEVTSTTSGPMAGLGVGLMVRRSSDPNLLASLKAEGSNKRWSAAAPHY-AGGDSPE---- 203
            .||                     :|..|...:..:|.|....|..|..|.|. .|.|:.|    
Mouse   217 RST---------------------MRSRSFKKINRALSALRRTKSGSVVANHVDQGRDNSENTTV 260

  Fly   204 -----RLFLDKAGGQLSPQWEEDDDPSHQLKEQLLHQQQPHAANGGSSSGNHQP----------- 252
                 |||.....|:::.......|||..|..:|:         |||.:    |           
Mouse   261 PEVFPRLFHLIPDGEITSIKINRADPSESLSIRLV---------GGSET----PLVHIIIQHIYR 312

  Fly   253 ---FARSGRL----------SMQFLGDGNGYKWMEAAEKLQNQPPAQQTYQQGSHHAGHGQNGAY 304
               .||.|||          .|......:.|     |.:|..||  .|..:              
Mouse   313 DGVIARDGRLLPGDIILKVNGMDISNVPHNY-----AVRLLRQP--CQVLR-------------- 356

  Fly   305 SSKSLPRESK-RKEPLGQAYESIREKDGEMLLIINEYGSP---LGLTALPDKEHGGGLLVQHVEP 365
              .::.||.| |........:|...:|....:|:|: .||   ||: .|..:....|:.:.:|..
Mouse   357 --LTVLREQKFRSRSNAHVPDSYGPRDDSFHVILNK-SSPEEQLGI-KLVRRVDEPGVFIFNVLN 417

  Fly   366 GSRAER-GRLRRDDRILEINGIKL-IGLTESQVQEQLRRALESSELRVRVLRGDRNRRQQRDSKV 428
            |..|:| |:|..:||:|.|||..| .|..||..     ..:::||.||.::..    ||.|.|..
Mouse   418 GGVADRHGQLEENDRVLAINGHDLRFGSPESAA-----HLIQASERRVHLVVS----RQVRQSSP 473

  Fly   429 AEMVEVATVS-PTRKPHAAPVGTSLQVANTRKLGRKIEIMLKKGPNGLGFSVTTRDNPAGG---- 488
            ....|...:| ..:.|......|:.:.|.|  ...|:..:.|.....||.:|      .||    
Mouse   474 DIFQEAGWISNGQQSPGPGERNTASKPAAT--CHEKVVSVWKDPSESLGMTV------GGGASHR 530

  Fly   489 --HCPIYIKNILPRGAAIEDGRLKPGDRLLEVDGTPMTGKTQTDVVAILRGMPAGATVRIVVSRQ 551
              ..|||:.::.|.|....|||:|.||.||.|:|..:|..::|:.||||:..|:...::.:..::
Mouse   531 EWDLPIYVISVEPGGVISRDGRIKTGDILLNVNGIELTEVSRTEAVAILKSAPSSVVLKALEVKE 595

  Fly   552 QELAEQADQPAEKSAGVAVAPSVAPPAVPAAAAPAPPIPVQKSSSARSLFTHQQQSQLNESQHFI 616
            ||..|...                    |||.                           :|.|.:
Mouse   596 QEAQEDCS--------------------PAAL---------------------------DSNHNV 613

  Fly   617 DAGSESAASNDSLPPS--SNSWHSREELTLHIPVHDTEKAGLGVSVKGKTCSNL----NASGSSA 675
                        .||.  |.||....||..::                ..|.::    |.:||..
Mouse   614 ------------TPPGDWSPSWVMWLELPQYL----------------CNCKDVILRRNTAGSLG 650

  Fly   676 SSGSNGLMKHDGDLGIFVKNVIHGGAASRDGRLRMNDQLLSVNGVSLRGQNN---AEAMETLRRA 737
            .....|..::.|:...|:|:::.|..|..|||:|..|.||:|||.|..|..:   |..::.|:..
Mouse   651 FCIVGGYEEYSGNKPFFIKSIVEGTPAYNDGRIRCGDILLAVNGRSTSGMIHACLARMLKELKGR 715

  Fly   738 MVNTPGKHPGT 748
            :..|....|||
Mouse   716 ITLTIASWPGT 726

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bazNP_001036283.1 DUF3534 <62..174 CDD:288873 23/119 (19%)
PDZ_signaling 341..412 CDD:238492 25/75 (33%)
CRS1_YhbY <390..>436 CDD:294440 12/45 (27%)
PDZ_signaling 462..548 CDD:238492 29/91 (32%)
PDZ_signaling <686..753 CDD:238492 23/66 (35%)
Lnx1NP_001153049.1 mRING-HC-C3HC3D_LNX1 42..83 CDD:319693
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 185..220 10/63 (16%)
NPXY motif 185..188 1/2 (50%)
Interaction with MAGEB18. /evidence=ECO:0000250 186..244 16/86 (19%)
PDZ_signaling 276..360 CDD:238492 21/119 (18%)
PDZ_signaling 384..464 CDD:238492 28/86 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 481..500 3/18 (17%)
PDZ_signaling 506..589 CDD:238492 29/88 (33%)
PDZ_signaling 637..721 CDD:238492 24/83 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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