DRSC/TRiP Functional Genomics Resources

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Protein Alignment baz and USH1C

DIOPT Version :9

Sequence 1:NP_001036283.1 Gene:baz / 32703 FlyBaseID:FBgn0000163 Length:1520 Species:Drosophila melanogaster
Sequence 2:XP_016872564.1 Gene:USH1C / 10083 HGNCID:12597 Length:956 Species:Homo sapiens


Alignment Length:1043 Identity:197/1043 - (18%)
Similarity:309/1043 - (29%) Gaps:372/1043 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   344 LGLTALPDKEHGGGLLVQHVEPGSRAERGRLRRDDRILEINGIKLIGLTESQVQEQLRRALESSE 408
            |||:.....|.|.||.:.|:..|.:|:...|:..|.|:.|||..:...|..:| ..|.|..::..
Human    98 LGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEV-INLIRTKKTVS 161

  Fly   409 LRVRVL--------RGDRNRRQQRDSKVAEM--VEVATVSPTRKPHAAPVGTSLQVANTRKLGRK 463
            ::||.:        ..:....|..|..|:|.  |..:..||               .|.....:|
Human   162 IKVRHIGLIPVKSSPDEPLTWQYVDQFVSESGGVRGSLGSP---------------GNRENKEKK 211

  Fly   464 IEIMLKKGPNGLGFSVTTRDNPAGGHCPIYIKNILPRGAAIEDGRLKPGDRLLEVDGTPMTGKTQ 528
            :.|.| .|..|||.|:::......|   |:|.::.|...:.|.| |:.||:::||:|...:....
Human   212 VFISL-VGSRGLGCSISSGPIQKPG---IFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDH 271

  Fly   529 TDVVAILRG---------MPAGATV------RIVVSRQQELAE-----------------QADQP 561
            .:.|.:|:.         ..||..:      |:..:||:||..                 |..|.
Human   272 KEAVNVLKSSRSLTISIVAAAGRELFMTDRERLAEARQRELQRQELLMQKRLAMESNKILQEQQE 336

  Fly   562 AEKSAGVAVAPSVAPPAVPAAAAPAPPIPVQKSSSARSLFTHQQQSQLNESQHFIDAGSESAASN 626
            .|:.....:|                    ||::.....:..:.:..:.|.:.|.....|     
Human   337 MERQRRKEIA--------------------QKAAEENERYRKEMEQIVEEEEKFKKQWEE----- 376

  Fly   627 DSLPPSSNSWHSREELTL--------H-IPVHDTEKAGLGVSVKGKTCSNLNASGSSASSGSNGL 682
                    .|.|:|:|.|        | :|:...:..|......|| ...:...|........|.
Human   377 --------DWGSKEQLLLPKTITAEVHPVPLRKPKSFGWFYRYDGK-FPTIRKKGKDKKKAKYGS 432

  Fly   683 MKHDGDLGIFVKNVIHGGAASRDGRLRMNDQLLSVNGVSLRGQNNAEAMETLRRAMVNTPGKHPG 747
            ::.                      ||.|.:.|.......:  ...|.:|..::..:|       
Human   433 LQD----------------------LRKNKKELEFEQKLYK--EKEEMLEKEKQLKIN------- 466

  Fly   748 TITLLVGRKILRSASSSDILDHSNSHSHSHSNSSGGSNSNGSGNNNNSSSNASDNSGATVIYLSP 812
                    ::.:..|.::..|...|....:                            .|..|..
Human   467 --------RLAQEVSETEREDLEESEKIQY----------------------------WVERLCQ 495

  Fly   813 EKREQRCNGGGGGGSAGNEMNRWSN-------------PVLDRLTGGICSSNS-----------A 853
            .:.||.       .||.||::..:.             |.|.|..||:....:           .
Human   496 TRLEQI-------SSADNEISEMTTGPPPPPPSVSPLAPPLRRFAGGLHLHTTDLDDIPLDMFYY 553

  Fly   854 QPSSQQSHQQQPHPSQQQQQQRRLPAAPVCSSAALRNESYYMATNDNW----------------- 901
            .|.:..:....||| .......::||.||     |....:..|::..|                 
Human   554 PPKTPSALPVMPHP-PPSNPPHKVPAPPV-----LPLSGHVSASSSPWVQRTPPPIPIPPPPSVP 612

  Fly   902 -------SPAQMHLMTAHGNTALLIEDDAEPMSPTLPARPHDGQHCNTSSANPSQNL-------- 951
                   .|....|..|..|......|...|:. ...|:.|.|:  .|:|..|.|:.        
Human   613 TQDLTPTRPLPSALEEALSNHPFRTGDTGNPVE-DWEAKNHSGK--PTNSPVPEQSFPPTPKTFC 674

  Fly   952 --AVGNQGPPINTV--PGTPSTSSNF---DATYSSQLSLET------------------NSGVEH 991
              ....:||.::|:  |.......||   .|..|..|..|.                  ..|.:.
Human   675 PSPQPPRGPGVSTISKPVMVHQEPNFIYRPAVKSEVLPQEMLKRMVVYQTAFRQDFRKYEEGFDP 739

  Fly   992 FS----RDALGR--RSISEKHHAALD-ARETG------------TYQRNKKLREERERERRIQLT 1037
            :|    ...:|:  |.:..|...:|| |.|.|            .|:|.     ..||...|   
Human   740 YSMFTPEQIMGKDVRLLRIKKEGSLDLALEGGVDSPIGKVVVSAVYERG-----AAERHGGI--- 796

  Fly  1038 KSAVYGGSIESLTARIASANAQFSGYKHAKTASSIEQRETQQQLAAAEA---EARDQLGD----- 1094
               |.|..|.::..:|.                      |...||.|||   :|.:|.||     
Human   797 ---VKGDEIMAINGKIV----------------------TDYTLAEAEAALQKAWNQGGDWIDLV 836

  Fly  1095 --------LGPSLGMKKSSSLESLQTMVQELQ-----------MSDEP-----RGHQALRAPRGR 1135
                    ....|....||..||.|.:.:.|:           :..||     .||:||..|   
Human   837 VAVCPPKEYDDELASLPSSVAESPQPVRKLLEDRAAVHRHGFLLQLEPTVNRQAGHRALCVP--- 898

  Fly  1136 GREDSLRAAVVSE--PDASKPRKTWLLEDGDHEGGFASQRNGPF---QSSLNDGKHGCKSSRAKK 1195
                   ||....  |..|.....|.||  ..:|.......|..   |.:.:|.|...:.|.| |
Human   899 -------AACSGHLLPTLSAGSLDWRLE--GTQGAIPEVLPGACCWPQWNSSDSKPSPQGSGA-K 953

  Fly  1196 PSI 1198
            ||:
Human   954 PSL 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bazNP_001036283.1 DUF3534 <62..174 CDD:288873
PDZ_signaling 341..412 CDD:238492 20/67 (30%)
CRS1_YhbY <390..>436 CDD:294440 11/55 (20%)
PDZ_signaling 462..548 CDD:238492 25/100 (25%)
PDZ_signaling <686..753 CDD:238492 7/66 (11%)
USH1CXP_016872564.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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