DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chchd2 and chchd10

DIOPT Version :10

Sequence 1:NP_573196.1 Gene:Chchd2 / 32701 FlyBaseID:FBgn0260747 Length:170 Species:Drosophila melanogaster
Sequence 2:XP_002940705.2 Gene:chchd10 / 100379881 XenbaseID:XB-GENE-5962008 Length:147 Species:Xenopus tropicalis


Alignment Length:171 Identity:77/171 - (45%)
Similarity:95/171 - (55%) Gaps:34/171 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVRRGRSASPPPSTRRTAPVQARAPAPAPAPVQTRAPAPAASAPVPAPMSAPPSAVGMPAPQQPS 65
            |.|.||||.|     |||...|.:|||||||..   |.|:|.|..|||            .|.|.
 Frog     1 MARGGRSAPP-----RTASSHASSPAPAPAPAN---PPPSALASAPAP------------SQGPG 45

  Fly    66 MFQQMAATAGGVAVGSAIGHTVGHGLTSLFSGSGDKEA--AAPAPAAAAPAPQQ--PYYAQQQQP 126
            :..|||.||.|||||||:||.:|..||..||||..:.|  .|..|..::..|||  |::      
 Frog    46 LMAQMATTAAGVAVGSAVGHVLGGALTGAFSGSSSEPAKPVAQEPQRSSAVPQQIPPHH------ 104

  Fly   127 NEPQGACAWELKQFIQCAQGQADLTLCEGFNEALRQCKQSH 167
                |.|.:|:|||:.||..|:||||||||:|.|:|||.::
 Frog   105 ----GPCHYEMKQFLDCATTQSDLTLCEGFSEVLKQCKSNN 141

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chchd2NP_573196.1 CHCH 133..165 CDD:429096 20/31 (65%)
chchd10XP_002940705.2 COG3416 <35..>81 CDD:442642 27/57 (47%)
CHCH 107..140 CDD:429096 21/32 (66%)

Return to query results.
Submit another query.