DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5004 and Phldb2

DIOPT Version :9

Sequence 1:NP_573195.1 Gene:CG5004 / 32698 FlyBaseID:FBgn0260748 Length:1247 Species:Drosophila melanogaster
Sequence 2:XP_038944805.1 Gene:Phldb2 / 685611 RGDID:1591402 Length:1358 Species:Rattus norvegicus


Alignment Length:1461 Identity:313/1461 - (21%)
Similarity:516/1461 - (35%) Gaps:438/1461 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TKKDPSLRVAA--SDPHLVSLGGGR---------LSTAVTIHYIHIGDTTIGSAASCSISLNGSG 57
            ||:.||...::  |.|.|..:.||:         :|....|.::           |.:.||:|..
  Rat   109 TKRSPSPLGSSVRSSPSLAKIQGGKQFCDGIDKNISMKPPISFL-----------SSTASLSGYP 162

  Fly    58 VRPLHCTIYRS-DANEVTLVPEK-------------DSRLLIDGAPILEETKLSQGAMITIGNSN 108
            :.......|.. |:.....:.||             ||...:.||    |.:.:.|:::|:.|.|
  Rat   163 IGKADLDHYTGRDSERSFRLSEKPPYSRYSSRNKSHDSVYFLGGA----EGRKASGSLLTMWNGN 223

  Fly   109 YLRFNNPDEAQMMRSAMGSNERISMPQIDFTQSARQAHE--LSQSLEL--------ESFYESII- 162
            .|  :....|.:.||...     |||     .|.:||.:  |..:|.|        |...|::. 
  Rat   224 SL--SGTGSAPISRSGAA-----SMP-----SSPKQARKMNLQDNLPLQPRLSRHKEQASENVSV 276

  Fly   163 -------NPINNPSTYELECPKVF---SSDLVTVNMPAKDVLGQKYASFARNLAENHRNEKQLNN 217
                   :.::|...|....|:::   .:.:..:::|.::.||        |.......||.|.:
  Rat   277 RTRKYSGSSLSNMGAYSRSLPRLYKATDNQMSPLSLPPRNSLG--------NSRRGQLGEKDLPH 333

  Fly   218 QYAKGVGSNGGYWN---VPSNAAIYK------EQHQQQHQQAPQD-------LLTKVNNDRYDRY 266
            ...    .|..|.|   :.|.|:.||      ..:.......|..       ||...::|.:||.
  Rat   334 SLV----DNDNYLNFSSLSSGASPYKTCLSDGNPYVSSALSVPASPRVARKMLLASTSSDDFDRA 394

  Fly   267 PKAGGLQIYS-MNGVNSDINNGPATGNNSGTGGGAELEDMLKICTEYADRNNSMPSTHNVSSTSS 330
            ..:|....:| ::|....:    .....:.:.|..||:|            :.:.|...    ||
  Rat   395 SYSGTSPSHSFLSGEPDRV----LVARRNFSCGSMELDD------------SDLESLRQ----SS 439

  Fly   331 ITSSPIVQNRIKTNGSLP-----------------RDKNKSPFPQQAGVASSANISLLSSSSGYE 378
            .|..||::.|..:..|:.                 |::......:|   .....:||.:..:..|
  Rat   440 ETPQPILRERKSSISSISGRDDLMDYHRRQREERLREQEMERLERQ---RLETILSLCAEYTKPE 501

  Fly   379 NVRLLGPNRVEINGQIHVPASAGDGGSSSGVSSNAL-APTAAVRASHENLNQN----------HS 432
            ..||.....|....:|:.............|...|| .|.|..|...:...|:          ||
  Rat   502 GRRLSAGTTVADVQKINKELEKLQLSDEESVFEEALVCPDARYRCHRKGSLQDVDIAGFGSLGHS 566

  Fly   433 ATTGGKYVPQSPRTKIRTNCMSPKKDVSFGNAFALAISPPPLASSAVVSTSKPIPIPSMVKPPLA 497
            |:.      .:||        ..|.|...|:   |...|||.:::.:.:|::...:      .:.
  Rat   567 ASF------LAPR--------GSKNDELLGD---LTRMPPPSSAAFLKATNESSYL------SIL 608

  Fly   498 PKPPAPNQQRDYEQLFKSFERKQQQLDRMVPAKRSNKNINNLTLNLQSVESQTQSPKPSRKPAPA 562
            ||.|....:          |::.|:|..|..|:....|      ||:.:|.:.:....       
  Rat   609 PKTPEDMGE----------EQRTQELAAMEDARMVILN------NLEELEQKIKDIND------- 650

  Fly   563 PRSIHLEQRQRRELIQRRKQLKRELAELPPSAGIEGLELKLGEQPLAPSASPRLQLQALQNRVCR 627
                        ::.:..::|..|.|.|......|..|| :.|:.:         |..|..::..
  Rat   651 ------------QMDESSRELDMECALLDGEQKSETAEL-MKEKEI---------LDHLNRKITE 693

  Fly   628 LE----AQRNATRVMEENQQAKLKQSIEIKQDQLKKL----RAMLKQKPNNACLKEELQLVCESL 684
            ||    .::...:|..:.::.||::..|:..:|..:|    .||.:|      |:::|:...:.|
  Rat   694 LEKNIVGEKTKEKVKLDAEREKLERLQELYSEQKTQLDNCPEAMREQ------LQQQLKRDADLL 752

  Fly   685 ESDRKTFEDLEFQYFEEESEHHASHEEFKRQEQRLMLEAELAALRIQIGPDEEEPGSPTSPGSTG 749
            :.:.|.|||||||..|.||......|...:|     |..|:|..:..|...:|:           
  Rat   753 DVESKHFEDLEFQQLEHESRLDEEKENLTQQ-----LLREVAEYQRNIVARKEK----------- 801

  Fly   750 SNLVNGVMSQSLFGSAELLCPKRRNQEDLMSKSVNENMFYNHKIEANTSTPKRLPLQLFEDLAGG 814
               ::.:..|    ::.::...:|.|:..:.:..|..|....:.|...:..|:     :..|.||
  Rat   802 ---ISALKKQ----ASHIVQQAQREQDHFVKEKNNLIMMLQREKENLCNLEKK-----YSSLTGG 854

  Fly   815 SCEQISFNLSLQGDRFEVNP--LERRVPSQDDIDRSC---------------------KVANDAP 856
            .             .|.:||  |:....|.::|:.||                     :.|:..|
  Rat   855 K-------------GFPINPNTLKEGYISVNEINESCGNSMNLSPSTQFPADADAAVTEPASAVP 906

  Fly   857 ISASQGAS------------TKIFDSIMEIERNRKLLLAQQGHQVIEHERQKMYD----LKKKSH 905
            :|..|.:.            :.:..|:.|...     .|.........:...:.|    |..|.|
  Rat   907 VSQPQSSEHQSAVCSGFMPPSTLSPSVTESSS-----AAWPEVMATPVDSFPLNDTPPPLPAKKH 966

  Fly   906 DEARTQYLLSTQQSMEQQRQLESDANGGKDAKLFEKTELQKLNQKPGEPVDDQVQKIAGDKENNV 970
                     ..||..|||.              |...|.:|...|.|..:.|.:.:         
  Rat   967 ---------RRQQPQEQQH--------------FRSLEERKKQHKEGLYLSDTLPR--------- 999

  Fly   971 QNRKSTGSSPTTTTTTTTGGGTTPQQ-----QRHSQPELEHHAIALG---------IGGGGSGGA 1021
              :|:|.|.....::.|.|..|||:.     |.:|...:..|::|..         :.|..:..|
  Rat  1000 --KKTTPSLSPHFSSATMGRSTTPKAHLPLGQSNSCGSVLPHSLATMTKDAESRRILRGRMNSSA 1062

  Fly  1022 GGANQMVARSPRPLSEANNCDATIEAPKFANGM---DSSASPAVADN-KRASSNSQDTASAGSGS 1082
            |..:|.::...|...|..:..|: |:..:.|..   |.|......|. ...||:|.:|:.:....
  Rat  1063 GYNHQQMSEGQRQKPEFYSRTAS-ESNVYLNSFHYSDRSYKDQAYDTLSLDSSDSMETSISACSP 1126

  Fly  1083 GNSGSGGST------------------------------------------------------AS 1093
            .|..|..::                                                      .|
  Rat  1127 DNISSASTSNIARIEEMERLLKQAHAEKTRLLESREREMEAKKRALEEEKRRREILEKRLQEETS 1191

  Fly  1094 DRKRVLPK----------HQRPLTRYLPIFSPDLNLRHHIETAGHQIDPCPHVFVDAHSCRGYLH 1148
            .|::::.|          ..||||||||:...|.:||.|:|||||.||.|.||.:...:|||||.
  Rat  1192 QRQKLIEKEVKIREKQRAQARPLTRYLPVRKEDFDLRSHVETAGHNIDTCFHVSITEKTCRGYLI 1256

  Fly  1149 KLGATFHAWSRRWFVLDRQRSALIYYSDKSERKPRGGAYFATIDEVYLDHL-NASKSGRPHCTFI 1212
            |:|.....|.:||||.||.:....||:||.|.|.:|..||..|:|||.||| ||:||..|..||.
  Rat  1257 KMGGKIKTWKKRWFVFDRNKRTFSYYADKHEAKLKGVIYFQAIEEVYYDHLKNANKSPNPLLTFS 1321

  Fly  1213 VKTKKRSYNLQAASDSAARIWIDAIITGAQG 1243
            |||..|.|.:.|.|..|.|||:|.|:|||:|
  Rat  1322 VKTHDRIYYMVAPSPEAMRIWMDVIVTGAEG 1352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5004NP_573195.1 FHA 41..104 CDD:278899 14/76 (18%)
PH-like 1142..1242 CDD:302622 52/100 (52%)
PH 1143..1237 CDD:278594 49/94 (52%)
Phldb2XP_038944805.1 Smc <618..851 CDD:224117 58/301 (19%)
DUF5401 <1139..>1206 CDD:375164 3/66 (5%)
PH_PHLDB1_2 1247..1351 CDD:270192 52/103 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 102 1.000 Domainoid score I6674
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 204 1.000 Inparanoid score I3666
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D45023at33208
OrthoFinder 1 1.000 - - FOG0003925
OrthoInspector 1 1.000 - - otm45110
orthoMCL 1 0.900 - - OOG6_105283
Panther 1 1.100 - - O PTHR12156
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
99.060

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