DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5004 and sub

DIOPT Version :10

Sequence 1:NP_573195.1 Gene:CG5004 / 32698 FlyBaseID:FBgn0260748 Length:1247 Species:Drosophila melanogaster
Sequence 2:NP_611260.1 Gene:sub / 44870 FlyBaseID:FBgn0003545 Length:628 Species:Drosophila melanogaster


Alignment Length:299 Identity:58/299 - (19%)
Similarity:103/299 - (34%) Gaps:111/299 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LTKKDPSLRVAASDPHLVSLGGGRLSTAVT-----------------IHYIHIGDTTIGSAASCS 50
            :|..:.:||       |:.||..|.:.|.|                 :.|...|.||..|...|.
  Fly   323 VTSSEEALR-------LLRLGQQRSTYASTSVNANSSRSHCVFTVDILKYNRSGITTQSSYKFCD 380

  Fly    51 IS----LNGSGVRPL----------------HC-----TIYRSDANEVTLVPEKDSRL-LIDGAP 89
            ::    :|.:|...|                .|     |:.:.  ....::|.:||:| ::..|.
  Fly   381 LAGSERVNNTGTSGLRLKEAKNINTSLMVLGRCLDAASTVQKK--KNADIIPYRDSKLTMLLQAA 443

  Fly    90 ILEETKLSQGAMITI--------GNSNYLRFNNPDEAQMMRSAMGSNERISMPQI---------- 136
            :|.:.||:.  ::|:        .|.|.|.|.:..:..:.:..:....|:|....          
  Fly   444 LLGKEKLAM--IVTVTPLDKYYEENLNVLNFASIAKNIIFKEPVIKQHRVSYCGFMEFSKMSTCE 506

  Fly   137 --DFT--------------QSARQAHELSQSL-------ELESFYESIINPINNPSTYELECPKV 178
              |:|              :..:..|.|...|       ||.:.|:.||.  ||...||.||.| 
  Fly   507 GGDYTKELEDENVRLQLEIEQLKYDHVLQMQLLEEKLRRELTATYQEIIQ--NNKKQYEDECEK- 568

  Fly   179 FSSDLVTVNMPAKDVLGQKYASFARNLAENHRNEKQLNN 217
                        |.::.|:.:.|..: ::..|.|:|:.:
  Fly   569 ------------KLLIAQRESEFMLS-SQRRRYEEQIED 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5004NP_573195.1 FHA_PHLB1 1..122 CDD:438765 33/169 (20%)
SMC_N <570..730 CDD:481474
Caldesmon <664..801 CDD:460421
PH-like 1142..1242 CDD:473070
subNP_611260.1 KISc 89..477 CDD:276812 33/164 (20%)
GBP_C <512..603 CDD:293879 21/99 (21%)
coiled coil 576..586 CDD:293879 1/10 (10%)
coiled coil 592..603 CDD:293879 0/3 (0%)
Blue background indicates that the domain is not in the aligned region.

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