DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5004 and Kif3C

DIOPT Version :9

Sequence 1:NP_573195.1 Gene:CG5004 / 32698 FlyBaseID:FBgn0260748 Length:1247 Species:Drosophila melanogaster
Sequence 2:NP_651939.4 Gene:Kif3C / 43820 FlyBaseID:FBgn0039925 Length:649 Species:Drosophila melanogaster


Alignment Length:681 Identity:122/681 - (17%)
Similarity:219/681 - (32%) Gaps:232/681 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 TQSARQAHELSQSLELESFYESIINP--------------INNPST-----YELECPKVFSSDLV 184
            |:..|....:   :|:..|..|:.||              :.|..|     |:..|..:..|.:.
  Fly    17 TEKERNCQNI---VEINEFAVSVTNPSARISQQKKFIFDSVYNMKTDTEVIYDEMCYSLVESTIE 78

  Fly   185 TVNMPAKDVLGQKYASFARNLAENHRNEKQLNNQYAKGV--------------GSNGGYWNVPSN 235
            ..|       |..:|.......:.|..:...|...:.|:              .:|..|..:.:.
  Fly    79 GYN-------GTIFAYGQTGCGKTHTMQGDENFSNSTGIIPKCFDHIFERISMTTNVRYLALVTY 136

  Fly   236 AAIYKEQHQQQHQQAPQDLLTKVNNDRYDRYPKAGGLQIYSMNGVNSDINNGPATGNNSGTGGGA 300
            ..||.|:        .:|||.|..|                .|.:|..:...|..|         
  Fly   137 LEIYNER--------IRDLLNKNEN----------------TNVINHFLKELPGIG--------- 168

  Fly   301 ELEDMLKICTEYADRNNSMPSTHNVSSTSSITSSPIVQ-----------NRIKTNGSLPRDKN-- 352
                                     .|..::|:.|:|.           |:.:...:...:||  
  Fly   169 -------------------------VSVPTLTTQPVVNANQCYDWLHFGNKNRVTAATLMNKNSS 208

  Fly   353 -----------KSPFPQQAGVASSANIS----LLSSSSGYENVRLLGP--NRVEINGQIHVPASA 400
                       :|||....|..:...|.    .|...:|.|..|..|.  :|::...||::..||
  Fly   209 RSHTIFTITLEQSPFLNSIGSDAFGGICRGKLSLVDLAGSERQRKTGAQGDRLKEASQINLSLSA 273

  Fly   401 GDGGSSSGVSSNALAPTAAVRASH-----ENLNQNHSATTGGKYVPQSPRTK-IRTNCMSPKKDV 459
                     ..|.::.....:|.|     ..|.:....:.||       .|| :..:|:|| .|:
  Fly   274 ---------LGNVISSLVDGKAKHVPFRDSKLTRLLQDSLGG-------NTKTLMISCISP-TDI 321

  Fly   460 SFGNAFALAISPPPLASSAVVSTSKPIPIPSMVKPPLAPKPPAPNQQRDYEQLFKSFERKQQQLD 524
            .:..    .||....||.|...::|          |...:.|...:.|.|:......:|..|:..
  Fly   322 HYDE----TISTLRYASRAKNISNK----------PKINEDPKDARLRQYQNEILYLKRMLQESQ 372

  Fly   525 RMVPAKRSNKNIN-----------------NLTLNLQSVE-----------SQTQSPKPSRKPAP 561
            :::     |||.:                 |.|.|:|.::           :.:...||:.....
  Fly   373 QII-----NKNNDPNKIIKSPLKIIQHTNMNSTKNVQIIDLGRNCKASFKTNNSILTKPNFPLIQ 432

  Fly   562 APRSIHLEQRQRRELIQRRKQLKRELAELPPSAGIEGLELKLGEQPLAPSASPRLQLQALQNRVC 626
            :...:.|:.|.|.:||:|         .|.....|...|||  |:.:|...:.:..|.|:...:.
  Fly   433 SKEEVQLQARSRIDLIKR---------SLIGGERIHDFELK--EKHMARKYAAQRHLSAIAIALS 486

  Fly   627 RLEAQRNATRVMEENQQAKLKQSIEIKQDQLKKLRAMLKQKPNNACLKEELQLVCESLESDRKTF 691
            |::.:   .|.:.:...|.:.|.|:||.|.::|.:..:|.      |:.|:..:....:.||:.:
  Fly   487 RVKCE---DRDLLQGHYATITQEIDIKNDYIRKCKEKIKM------LEMEVSDLNSEFQLDREDY 542

  Fly   692 EDLEFQYFEEESEHHASHEEFKRQEQRLMLE 722
            .| |.:....:.:.|          |:|.|:
  Fly   543 LD-EIRNLGRQVKFH----------QQLFLK 562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5004NP_573195.1 FHA 41..104 CDD:278899
PH-like 1142..1242 CDD:302622
PH 1143..1237 CDD:278594
Kif3CNP_651939.4 Motor_domain 3..339 CDD:277568 71/410 (17%)
Kinesin 10..339 CDD:278646 71/410 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45437705
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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