DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5004 and cana

DIOPT Version :9

Sequence 1:NP_573195.1 Gene:CG5004 / 32698 FlyBaseID:FBgn0260748 Length:1247 Species:Drosophila melanogaster
Sequence 2:NP_001027247.1 Gene:cana / 3771934 FlyBaseID:FBgn0040233 Length:1931 Species:Drosophila melanogaster


Alignment Length:1089 Identity:196/1089 - (17%)
Similarity:370/1089 - (33%) Gaps:334/1089 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 AHELSQSLELESFYESIIN----PINNPSTYEL-----ECPKVFSSDLVTVNMPAK--------D 192
            |.|:.|.:..|:..:.::.    .|.|...|:|     :..|:..|....||:..|        |
  Fly   107 AKEIFQQISSETERDFLLRVGYIEIYNEKIYDLLNKKNQDLKIHESGNGIVNVNCKESIVTSEDD 171

  Fly   193 VLGQKY-ASFARNLAENHRNEKQLNNQYAKGVGSNGGYWNVPSNAAIYK---EQHQQQH------ 247
            :|.|.| .:..|.:.|.:.||:...:.                  ||::   |..:..|      
  Fly   172 LLRQLYMGNKERVVGETNMNERSSRSH------------------AIFRIIIESRKSDHSDNDTV 218

  Fly   248 QQAPQDLLTKVNNDRYDRYPKAGGLQIYS--MNGVNSDINNGPATGNNS--------GTGGGAEL 302
            :|:...|:....:::.|....|..|.|:.  :..::..:::.|.:..:|        ..||....
  Fly   219 KQSVLSLVDLAGSEQVDPADHASSLMIFRNLVKSLSESVDSKPNSFRDSKLPRIMLPSLGGNVLT 283

  Fly   303 EDMLKICTEYADRNNS-------------MPSTHNVSSTS----------SITSSPIVQNRIKT- 343
            ..:..|...:.:.::|             .|....:.|.:          |:....:.:.:||. 
  Fly   284 SIICTITPSFVEESSSTISFGTCAKKIRCKPQVCKIDSETTMMRQLDRGISMLKDKLAKKKIKNE 348

  Fly   344 --------NGSLPRDKNKSPFPQQAGVASSANIS-------------LLSSSSG---------YE 378
                    .|.:.||..|        :.|||::.             ..|.|.|         .|
  Fly   349 SQLVLQELEGRIKRDMLK--------IVSSASLDDYRLQKRRRTWTLTASGSEGDAPVLALPEPE 405

  Fly   379 NVRLLGPNRVEINGQIHVP----ASAGDGGSSSGVSSNA-----------LAPTAAVRASHENLN 428
            ..||..|:::     .::|    ...|....:.|:....           ..|..|.:...|..:
  Fly   406 ESRLPRPSKL-----TNLPKPLFQRRGIAPKAKGICKTLKEKRLQTDNMDTMPGRAKQLGRETAS 465

  Fly   429 QNHSATTGGKYVPQSPRTKIRTNCMSPKKDVSFGNAFALAISPPPLASSAVVSTSKPIPIPSMVK 493
            :..|.....||....|      ||.:|:.::|     ||..| ..:|...:....:.:   ..:|
  Fly   466 RIPSVMMSKKYQESVP------NCDAPQTEIS-----ALTAS-NQVAKETIEKYEEQV---KRLK 515

  Fly   494 PPLAPKPPAPNQQRDYEQLFKSFERKQQQLDRMVPAKRSNKNINNLTLNLQSVESQTQSPKPSRK 558
            ..:........:..:..:.|::.:.|.:|::..:.:..|.|:...::|. ||:|..::....:.|
  Fly   516 ETIERLEMENGKAVNLGEQFETHKAKSKQMEEELLSSISEKDSTIVSLQ-QSLEELSRDVLRNSK 579

  Fly   559 PAPAPRSIHLEQRQRRELIQRRKQLKR------ELAELPPSAGIEGLELKL--GEQPLAPSASPR 615
                      |.:.|....:.....:|      ||..|.|.|...||:...  .:|..:..|:.|
  Fly   580 ----------EDQMRSMCPELESSCERICNKCLELERLLPLASASGLDSVACQFDQLRSEIAATR 634

  Fly   616 LQLQALQNRVCRLEAQRNATRVMEENQQAK-LKQSIEIKQDQLKKLRAMLKQKPNNACLKEELQ- 678
            ::|:::.:.......:     |.::....| |.:.|....|..    ..|::|.||...|...| 
  Fly   635 MKLESMLSTFSHASCE-----VSQKTTDCKRLSEQISTAHDDF----GQLQEKYNNLKHKWSSQK 690

  Fly   679 LVCESLESDRKTFEDLEFQYFEEESEHHASHEEFKRQEQRLMLEAELAALRIQIGPDEEE----- 738
            |..::::.|..|.:.   :|.:.:.|:.  |.|.:..||...|:.|.:.|:.:||..:|.     
  Fly   691 LAIDTMQVDYNTIQQ---KYLQLQDEYR--HLELRSDEQCQQLQDENSKLQAEIGTLKERVEEIH 750

  Fly   739 ------PGSPTSP---------------------------------------------------G 746
                  |...|.|                                                   .
  Fly   751 SELLEVPNPDTHPEDMELQNQELKKRLSKLQWEFDEIQLNYECLSNELMSTIQECDALREEHKQR 815

  Fly   747 STGSNLVNGVMSQSLFGSAELLCPKRRNQEDL------MSKSVNE----------NMF-YNHKIE 794
            :|.|:|.:  |..|..|: |...|:.....||      :|||:.:          .:| ||| .|
  Fly   816 TTNSDLES--MKSSGVGT-ECSDPENELDTDLLQQFTKLSKSIQQIELTDYSGGRRLFIYNH-AE 876

  Fly   795 ANTSTPK-RLPLQLFEDLAG-GSCEQISFNLSLQG----DRFEVNPL--ERRVPSQDD------- 844
            .:.|.|. :|.|:..:.|.| |.....|.::.|:|    .||::..:  |:.:..::|       
  Fly   877 QDQSVPSLKLCLEPAKYLEGDGKQHDASDSVFLKGFLKCQRFQIVKINQEQNLVKEEDRMRDIIF 941

  Fly   845 ------------IDRSCKVAND--APISA--------SQGASTKIFDSIMEIERNRKLLLAQQGH 887
                        |:...:|.|:  |.|::        :|.|.|||....::.:...:....|:..
  Fly   942 QLKQEVDGKKNLIEEEKEVINNLRAQITSLNQIETIKNQNAKTKILCEELQTKDTVQTANKQESQ 1006

  Fly   888 QV------IEHERQKMYDLKKKSHDEARTQYLLSTQQSMEQQRQLESDANG------GKDAKL-- 938
            :|      :.|.:.|:.:|:||          |..|...|:..:|:||...      ..:.||  
  Fly  1007 EVLTLKTSLAHLKSKVCELQKK----------LEKQSEDEKISELQSDIGEISECCLSMELKLAD 1061

  Fly   939 ---FEKTELQKLNQKPGEPVDDQVQKIAGDKENNVQNRKSTGSSPTTTT 984
               ::..||:.|:|.....|:.|......::..||:......:..|.||
  Fly  1062 IVNWQAEELRPLDQLQESGVELQHHSTTAEESLNVEKPIQEQTERTLTT 1110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5004NP_573195.1 FHA 41..104 CDD:278899
PH-like 1142..1242 CDD:302622
PH 1143..1237 CDD:278594
canaNP_001027247.1 KISc 8..316 CDD:214526 38/226 (17%)
Motor_domain 8..310 CDD:277568 37/220 (17%)
SMC_prok_B <471..1270 CDD:274008 133/694 (19%)
Mplasa_alph_rch 924..1647 CDD:275316 38/197 (19%)
CENP-H 1204..>1266 CDD:283493
CALCOCO1 <1489..1850 CDD:285171
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45437961
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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