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Protein Alignment CG8945 and Cpa2

DIOPT Version :9

Sequence 1:	NP_573190.1	Gene:	CG8945 / 32693	FlyBaseID:	FBgn0030815	Length:	1430	Species:	Drosophila melanogaster
Sequence 2:	NP_001013101.2	Gene:	Cpa2 / 296959	RGDID:	1305563	Length:	417	Species:	Rattus norvegicus

Alignment Length:	460	Identity:	130/460 - (28%)
Similarity:	220/460 - (47%)	Gaps:	85/460 - (18%)

- Green bases have known domain annotations that are detailed below.

  Fly   985 QIWRLKPQDEEQVRALEEFKKGEDGVKLQWLKGPSLRGLT-DVLVPPKMLVDFQGTLNYEGIAHE 1048
            |:..:.|..|||:|.|.:. :.|:.::|.:.|.|::.|.| .|.||...:...:..|..:||.:.
  Rat    24 QVLEIIPSHEEQIRTLLQL-EAEEHLELDFWKSPTIPGETVHVRVPFASIQAVKVFLESQGIDYS 87

  Fly  1049 VLIFDVGKAIAYELTKEDYL---QTTRPSKPRPTAPPPMTWNRYHNHDEIVKYLETVRMRHPQLV 1110
            ::|.||  .:..:..:|:.|   |..|...        ..:..||..:||.:.::.:...:|.||
  Rat    88 IMIEDV--QVLLDQEREEMLFNQQRERGGN--------FNFEAYHTLEEIYQEMDNLVAENPGLV 142

  Fly  1111 ELIHIGRSFEGRPLIVVKIESKQTAAAANNDGLHTIKRPKRKRKSGQANAVFVEAGAQGLAWIGP 1175
            ..::||.|||.||:.|:|..:                       .|...|::::||.....|:..
  Rat   143 SKVNIGSSFENRPMNVLKFST-----------------------GGDKPAIWLDAGIHAREWVTQ 184

  Fly  1176 AAATWMIAELLRLMKTNKSNED------VEFIRNT-TWYIMPVLNPDGYAYSHEYDRFWKKSRSQ 1233
            |.|.|         ..||...|      :..:.|| ..:::||.|||||.:|...:|.|:|:||:
  Rat   185 ATALW---------TANKIASDYGTDPAITSLLNTLDIFLLPVTNPDGYVFSQTTNRMWRKTRSK 240

  Fly  1234 HQTPPPSGLLDSAMTWLQQKRGPDKVCYGVDLDRNWLYHWGKRGSSKAPCNEFYAGPAPFSEPET 1298
            ..   .||                  |.|||.:|||..::|..|:|.:||::.|.||.|.||.|.
  Rat   241 RS---GSG------------------CVGVDPNRNWDANFGGPGASSSPCSDSYHGPKPNSEVEV 284

  Fly  1299 KAVSEFLMDYRTQIKLYISLQAYGQVISYPVKANSTFNSERLDDF--LD-VAMVGTDGLRKKGSK 1360
            |::.:|:..: .::|.:|:|.:|.|::.:|.....|    :.|||  || ||......|::....
  Rat   285 KSIVDFIKSH-GKVKAFITLHSYSQLLMFPYGYKCT----KPDDFNELDEVAQKAAQALKRLHGT 344

  Fly  1361 SRYKVDASNDLIEQRSGCADAFAAYEIGIPFSYTLQLADNGVHGYLLPSSAIEPTARDAFEIISG 1425
            | |||.....:|.|.||.:..: ||::||.:|:..:|.|.|.:|:|||:..|.|||.:.:..:..
  Rat   345 S-YKVGPICSVIYQASGGSIDW-AYDLGIKYSFAFELRDTGFYGFLLPAKQILPTAEETWLGLKT 407

  Fly  1426 MLDYI 1430
            :::::
  Rat   408 IMEHV 412

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.