DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ubr1 and Ubr1

DIOPT Version :9

Sequence 1:NP_001245723.1 Gene:Ubr1 / 32687 FlyBaseID:FBgn0030809 Length:1824 Species:Drosophila melanogaster
Sequence 2:NP_001171543.1 Gene:Ubr1 / 499877 RGDID:1562326 Length:1757 Species:Rattus norvegicus


Alignment Length:1926 Identity:618/1926 - (32%)
Similarity:924/1926 - (47%) Gaps:282/1926 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDRYDMEDVVVAPPAECSSPLKEWRLKRQAGTLDRSDIIEFLKRESPKYF-DYQTSATVKDTNVI 64
            ||..:..||...||.....|...|   .|.|....:.:....|.....|| :.......::.|| 
  Rat     6 MDGAERMDVSPEPPLAPQPPASWW---DQQGDFYTAFLHHLAKLVPEIYFAEMDPDLEKQEENV- 66

  Fly    65 TLKCMFKESLAKEEIIDVVVEFMLGDNPSSALEKLRLEGNTATVCGKVFKNGEPTYSCRECGVDP 129
                       :..|...:..::.|::|...||:|: ......:||||||:||.|||||:|.:||
  Rat    67 -----------QMSIFTPLEWYLFGEDPDVCLERLK-HSAAFQLCGKVFKSGETTYSCRDCAIDP 119

  Fly   130 TCVLCVNCFKRSAHRFHKYKMSTSGGGGCCDCGDDEAWKKDQYCELHLANRKNPLESKI---LTD 191
            |||||::||:.|.|:.|:|||.||.|||.|||||.||||...:|..|...|....:..:   |.:
  Rat   120 TCVLCMDCFQSSVHKNHRYKMHTSTGGGFCDCGDTEAWKTGPFCMDHEPGRAGTTKETLHCPLNE 184

  Fly   192 AVLERVEICFGAILAFCVSYL------EIEPNASLQCLDGNVEGGQVDGAQYCTVLYNDESHTFD 250
            .|:.:....|.:::.:.|...      |:.|  .||..:.|        .:|..||:|||.|::|
  Rat   185 EVIAQARRIFPSVIKYIVEMTIWEEEKELPP--ELQRREKN--------ERYYCVLFNDEHHSYD 239

  Fly   251 QVIQTLTKIAKCRAKDAMEIVAAIDREGRAVVKCDTFEECNKLKVSIENQMILPTSLVSTARNNQ 315
            .||.:|.:...|...:|.....|||:|||..||...:..|.:.|..|::.        |...:..
  Rat   240 HVIYSLQRALDCELAEAQLHTTAIDKEGRRAVKAGVYSACQEAKEDIKSH--------SENVSQH 296

  Fly   316 SLRTSVLHIGAVACQQFALQLLGWFQEFLVRHYLFRKTFSE--LVQR--KQETFCIRHILEYDVK 376
            .|...|||...:|.|:|||:|..|..:.:.....||:.|.:  |::.  .:....|..::.:|.|
  Rat   297 PLHVEVLHSVVMAHQKFALRLGSWMNKIMSYSSDFRQIFCQACLIEEPGSEHPCLISRLMLWDAK 361

  Fly   377 LWKTARTCWHRLLISGMLMEYDNKMILAQEFSRRYATIVEDFISDDHDHAFSIVSLSVQLFTVPS 441
            |:|.||...|.|:.|...||.:.|.:.|.||.:.|..:.:::|||||:.:.||.:||||:||||:
  Rat   362 LYKGARKILHELIFSSFFMEMEYKKLFAMEFVKYYKQLQKEYISDDHERSISITALSVQVFTVPT 426

  Fly   442 IAHHLIAHEGIFDKLLHTFYHVAIEKFIRNKTLHFSKNIASLTFFKRANYILYDLRYLLSLKPDV 506
            :|.|||..:.:...:..|...|..|...||...:|..  .|.....|...::.||:|:|..||.|
  Rat   427 LARHLIEEQNVISVITETLLEVLPEYLDRNNKFNFQG--YSQDKLGRVYAVICDLKYILISKPLV 489

  Fly   507 LSNDLRNGFLEGCRALMRVLNVMQGMESMTRQTGQHMDYEPEWECAFNLHIKLATTISQVIDWAS 571
            .:..||..||||.|:.:::|..|||||.:.||.|||::.:|:||.|..:.::|...:....:|.:
  Rat   490 WTERLRAQFLEGFRSFLKILTCMQGMEEIRRQVGQHIEVDPDWEAAIAIQMQLKNILLMFQEWCA 554

  Fly   572 GDVKLLRKLYKMTMRALV--SNSFIVGGEKVMQPKKVADHVANCLVYDISVQPVSIHLPLSRFFA 634
            .|..||...||...:|::  |.:|:...:.|:|   :..|......|.:|...|||||||||..|
  Rat   555 CDEDLLLVAYKECHKAVMRCSTNFMSSTKTVVQ---LCGHSLETKSYKVSEDLVSIHLPLSRTLA 616

  Fly   635 GIYL---HLGA----HD-LTYDGLQTETEALSIKLTPREIIE-PVLCTQAMIAQVGAGLWRRNGY 690
            |:::   .|||    |: :.:||.|.|.           ::| |:.|. .::|||.|.:|||||.
  Rat   617 GLHVRLSRLGAVSRLHEFVPFDGFQVEV-----------LVEYPLRCL-VLVAQVVAEMWRRNGL 669

  Fly   691 TLLHQLYFYRNVRCRVEMLDRDIACLQIGASLMESNEFLIHVLNRFNTIPWLQENYWSLLSGNEM 755
            :|:.|:::|::|:||.||.|:||..||||||:|:.|:||:.||.|:.    |.:.:...:|..: 
  Rat   670 SLISQVFYYQDVKCREEMYDKDIIMLQIGASIMDPNKFLLLVLQRYE----LADAFNKTISTKD- 729

  Fly   756 NDDIIRE-ASIFDEFLELLIVIIGERWMPGVSMVTEEDRLRKEIIQLLCIKPYSHSELSRALPDG 819
             .|:|:: .::.:|.|::||.|:|||::|||..||:|:.:.:||..||||:|..||.::|.||:.
  Rat   730 -QDLIKQYNTLIEEMLQVLIYIVGERYVPGVGNVTKEEVIMREITHLLCIEPMPHSAIARNLPEN 793

  Fly   820 NSGNSDNVFEEVINTVAVFKKPVGADSKGVYELKEHLLKEFNMYFYHYTKEDKSKAEELQRERRK 884
            .  |::...|.|||.||.|||| |....||||||:..||:||||||||:|...||||.:|::|||
  Rat   794 E--NNETGLENVINKVATFKKP-GVSGHGVYELKDESLKDFNMYFYHYSKTQHSKAEHMQKKRRK 855

  Fly   885 AKKQLVCCPPPMLPKLTPAFTPMANILQCPVFLNICSLIMERALNAYSRSFTESHLQKVLHLLGY 949
            .:.:....|||..|:..|||:.:.::|.|.:.::|...|.|||::..|..:||..||...|:|..
  Rat   856 QENKDEALPPPPPPEFCPAFSKVTDLLNCDIMMHILRTIFERAVDPESNLWTEGMLQMAFHILAL 920

  Fly   950 AIQEE------LSEHYPFLSFYERSQEYG-----------ILEKLEELARCPRLEAHYDFVLWTI 997
            .:.||      ..|......||.::...|           :||||:.:   |:||...|.:.|.:
  Rat   921 GLLEEKQQLQKAPEEEVAFDFYHKASRLGSSAMNAQNIQMLLEKLKGI---PQLEGQKDMITWIL 982

  Fly   998 ERF---KQLQAKQAPSDGRAGPSC-SQQGTGGKLSLSAEE----QAREERENRARLAAERRAHIM 1054
            :.|   |:|:.|          || ....|.|..|:.:||    :.:.||:.:|..|...|..||
  Rat   983 QMFDTVKRLREK----------SCLVVASTSGLESIKSEEITHDKEKAERKRKAEAARLHRQKIM 1037

  Fly  1055 AQMQKAQKSFISSNAEMFADTENETRKESASTGPMDWEDIPPEEEQGAVALESKVACLGPDRKFY 1119
            |||...||:||.::..|:.:|...|.||         :.|..||...||:..|::| |||.|...
  Rat  1038 AQMSALQKNFIETHKLMYDNTSEITGKE---------DSIMEEESPSAVSECSRIA-LGPKRGPA 1092

  Fly  1120 HGTDDTFKCILCFENCAISRGGRQLVSSAFVQTSRV------------------IFTTPNLRNSQ 1166
            ....:...||||.|...:......:|.||.||.|..                  :|..|:|.:..
  Rat  1093 LTEKEVLTCILCQEEQEVKLENNAMVLSACVQKSTALTQHRGKPAGLLGESLDPLFMDPDLAHGT 1157

  Fly  1167 SALHISCCGHVMHYSCWLEYFTNEEFKELRRPHRNRAALAQAANVEFQCPYCRTLSNAIIPV--- 1228
            .|   ..||||||..||.:||   |..:|....|....|....:.|:.||.|::|.|.:||:   
  Rat  1158 YA---GSCGHVMHAVCWQKYF---EAVQLSSQQRIHVDLFDLESGEYLCPLCKSLCNTVIPIIPL 1216

  Fly  1229 ------TETLPAFSAPPSPNESYLPLDSFVEIMSTLAIELGNVKDHELTTLPSVSNILRLSGVVG 1287
                  :|...|.|       ..|.|..:::  :.||...|....|.....|:|. :|...|:  
  Rat  1217 QPQKINSENAEALS-------QLLTLARWIQ--TVLARISGYNMKHAKGEAPAVP-VLFNQGM-- 1269

  Fly  1288 GLAQFERSVQLIKNPPRLHADYIEGIEFLKK--------ALLNTMKIQQSHLKDHPAIESIEMVP 1344
            |.:.||           .|:....|::...|        .:|....|.:..|| .|..|....||
  Rat  1270 GDSTFE-----------FHSILSFGVQSSVKYSNSIKEMVILFATTIYRIGLK-VPPDELDPRVP 1322

  Fly  1345 IL-WDSCSYTLQALEIYLYAVEKPLKAELSMRHQSCARNLVRACSRSSALEWETDLPLLPPMRSQ 1408
            :: |.:|::|:||:|..|....|||...|..|..:..:.|::     .|:...|..|.:...:..
  Rat  1323 MMTWSTCAFTIQAIENLLGDEGKPLFGALQNRQHNGLKALMQ-----FAVAQRTTCPQVLIQKHL 1382

  Fly  1409 AEFSSRLLDTIFNQNDTSVLEWDCFRVLVPFQFGVLNLMVPEKGYKTIIP------SGSMFDFYI 1467
            ....|.:|..:.::|...:|..|.|.|||    |.: |..|...:...:.      |.|....|:
  Rat  1383 VRLLSVVLPNLQSENTPCLLSVDLFHVLV----GAV-LAFPSLYWDDTVDLQPSPLSSSYSHLYL 1442

  Fly  1468 MQTMFLAQLTKAVLCFDVEKEKAKRAEKAPNSELTQ--LDYIEQLPSRIRDNMIDFYRRYNIPAR 1530
            ...:.:|.:.:.:|..|        |:::|...|.:  .|..|                    ||
  Rat  1443 FHLVTMAHMLQILLTVD--------ADQSPGLPLNEGGEDSEE--------------------AR 1479

  Fly  1531 VLQKTKQKQLVEEESEENQGHGQTVVIPCESHHLALLLEYVQRQMSSFLRCSCLFYRFLTDVDFP 1595
            .     ...|..|.|:...|     :|.|.:....|.|. ::..::.:|||:.|.:.:|..|..|
  Rat  1480 C-----ASALFVEVSQHTDG-----LIGCGAPGWYLWLS-LRNGITPYLRCAALLFHYLLGVTPP 1533

  Fly  1596 -DTFPTDQPDRFDLMCQYLGLDPMLGVYFD--METVYATMMHSFASHPHIDREVEQR-C-QPDAR 1655
             :.|.......|..:|.||.|...|.:.|.  .:|:               |.:.|| | .|...
  Rat  1534 EELFANSAEGEFSALCSYLSLPTNLFLLFQEYWDTI---------------RPLLQRWCGDPALL 1583

  Fly  1656 RSLQVEPCLRPLPR----LKVLCDDFSDLINSVSDIFCPNNEREEMKTPTMCLICGLILCGQSYC 1716
            .||:.:..|...||    |..|.||:|.|:|..|...||.:..:|.|.|.:||.||.|||.|:.|
  Rat  1584 NSLKQKSALVRYPRKRNSLIELPDDYSCLLNQASHFRCPRSSDDERKHPVLCLFCGAILCSQNIC 1648

  Fly  1717 CQPELGKVSVGACTHHAHACGAEVGIFLRIRDCQVVYL-GRGKGCFVPPPYLDEYGETDMGLRRG 1780
            ||..:....||||..||..|||.|.|||:||:|:||.: |:.:||..|.||||||||||.||:||
  Rat  1649 CQEIVNGEEVGACVFHALQCGAGVCIFLKIRECRVVLVEGKARGCAYPAPYLDEYGETDPGLKRG 1713

  Fly  1781 NPLRLSQAAYRKIYLQWLGHGLHGEIARLNDNANVAAAAQW 1821
            |||.||:..|||::|.|..|.:..||||..:...:.....|
  Rat  1714 NPLHLSRERYRKLHLVWQQHCIIEEIARSQETNQMLFGFNW 1754

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ubr1NP_001245723.1 zf-UBR 109..176 CDD:280386 44/66 (67%)
ClpS 236..301 CDD:280736 24/64 (38%)
Ubr1NP_001171543.1 zf-UBR 99..166 CDD:280386 38/66 (58%)
ClpS 221..301 CDD:280736 27/79 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 721 1.000 Domainoid score I107
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 899 1.000 Inparanoid score I362
OMA 1 1.010 - - QHG59210
OrthoDB 1 1.010 - - D34639at33208
OrthoFinder 1 1.000 - - FOG0001341
OrthoInspector 1 1.000 - - otm45860
orthoMCL 1 0.900 - - OOG6_101603
Panther 1 1.100 - - LDO PTHR21497
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1260
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.980

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