DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4880 and Torsin

DIOPT Version :10

Sequence 1:NP_573177.1 Gene:CG4880 / 32680 FlyBaseID:FBgn0030803 Length:351 Species:Drosophila melanogaster
Sequence 2:NP_572178.1 Gene:Torsin / 31399 FlyBaseID:FBgn0025615 Length:340 Species:Drosophila melanogaster


Alignment Length:261 Identity:50/261 - (19%)
Similarity:88/261 - (33%) Gaps:84/261 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 KLSTVSGFLESYKNQYHSIVHNQDNYCNPSRRLGDMVLHARHQVLNQDLALNQLELALDNTTNEA 149
            |.|.||    :|:.:.::.|.:....|..|..:.|.|......|.:|..:|......:|.|.|..
  Fly   146 KESEVS----NYRVKINNAVRDTLRSCPRSLFIFDEVDKMPSGVFDQLTSLVDYNAFVDGTDNTK 206

  Fly   150 IVLVGTSGVGKSHTARILRETFPWPENVNTLSWTGSSSLGRVKSMLSGLTYCGQNMILIDNMTPK 214
            .:.:..|....||.|                     |.||.|.          :|..|.::....
  Fly   207 AIFIFLSNTAGSHIA---------------------SHLGSVM----------KNGRLREDTRLS 240

  Fly   215 DAHFVPIINEMISEGEKSANHTEHPQQKRLTIVFIFNVNSMQPGEEFEMDMEILRNMPHTQLVTF 279
            |  |.|::        :.|.:......|:.|::           |...:|          ..:.|
  Fly   241 D--FEPLL--------RKAAYNMDGGMKKTTMI-----------ESHVID----------HFIPF 274

  Fly   280 ATLDPTHLVDCI-------RREAAIAMVHLEDEHVEEIIKSIDA--------SASGCKSILAKVL 329
            ..::..|::.|:       ||:...|.   ..:.:|:||.|..:        :.||||::..||.
  Fly   275 LPMEKAHVIKCLEAELLRWRRDPKQAN---NQKIIEDIINSSISYDRTHSLFAISGCKTLEKKVA 336

  Fly   330 L 330
            :
  Fly   337 M 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4880NP_573177.1 P-loop containing Nucleoside Triphosphate Hydrolases 131..>181 CDD:476819 9/49 (18%)
TorsinNP_572178.1 P-loop containing Nucleoside Triphosphate Hydrolases 55..175 CDD:476819 8/32 (25%)

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