DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4880 and Tor1a

DIOPT Version :10

Sequence 1:NP_573177.1 Gene:CG4880 / 32680 FlyBaseID:FBgn0030803 Length:351 Species:Drosophila melanogaster
Sequence 2:NP_695215.2 Gene:Tor1a / 266606 RGDID:628863 Length:333 Species:Rattus norvegicus


Alignment Length:344 Identity:70/344 - (20%)
Similarity:118/344 - (34%) Gaps:103/344 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 LALAAGIGMLLQFTDKLS-------TVSGFLESYKNQYHSIVHNQDNYCNPSRRLG--------D 119
            |||...:..:::..:.:|       .::|:: ||...|....    ..|...|.|.        |
  Rat     8 LALLLLVPCVVRAVEPISLGLALAGVLTGYI-SYPRLYCLFA----ECCGQKRSLSREALQKDLD 67

  Fly   120 MVLHARHQVLNQDLALNQLELALDNTTNE---AIVLVGTSGVGKSHTARILRETFPWPENVN--- 178
            ..|..:|  |.:.:.||.:...|.|...:   .:.|.|.:|.||:..::|:.|.. :...:|   
  Rat    68 NKLFGQH--LAKRVILNAVSGFLSNPKPKKPLTLSLHGWTGTGKNFASKIIAENI-YEGGLNSDY 129

  Fly   179 ------TLSWTGSSSLGRVKSML-----SGLTYCGQNMILIDNMTPKDAHFVPIINEMISEGEKS 232
                  ||.:..:|::...|..|     ..::.|.:::.:.|.|....|..:..|...:...:..
  Rat   130 VHLFVATLHFPHASNITLYKDQLQMWIRGNVSACARSIFIFDEMDKMHAGLIDAIKPFLDYYDVV 194

  Fly   233 ANHTEHPQQKRLTIVFIFNVNSMQPGEEFEMDMEI-------------LRNMPHT---------- 274
               .|...||   .:|||..|:   |.|...|:.:             ||:|.|.          
  Rat   195 ---DEVSYQK---AIFIFLSNA---GAERITDVALDFWRSGKQREEIKLRDMEHALAVSVFNNKN 250

  Fly   275 ---------------QLVTFATLDPTHLVDCIRREAAIAMVHLEDEHVEEIIKSIDA-------- 316
                           ..|.|..|:..||..|||    :.|.....|..|:||..:..        
  Rat   251 SGFWHSSLIDRNLIDYFVPFLPLEYKHLKMCIR----VEMQSRGYEEDEDIINKVAEEMTFFPKE 311

  Fly   317 ----SASGCKSILAKVLLY 331
                |..|||::..|:..|
  Rat   312 EKVFSDKGCKTVFTKLDYY 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4880NP_573177.1 P-loop containing Nucleoside Triphosphate Hydrolases 131..>181 CDD:476819 13/61 (21%)
Tor1aNP_695215.2 Torsin 56..170 CDD:399367 23/116 (20%)
Interaction with SNAPIN. /evidence=ECO:0000250 92..252 32/169 (19%)
Interaction with KLC1. /evidence=ECO:0000250 252..333 19/83 (23%)
Interaction with SYNE3. /evidence=ECO:0000250 313..333 6/18 (33%)

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