Protein Alignment Rcp and RPC17

DIOPT Version :9

• Sequence 1: NP_573175.2
• Gene: Rcp / 32678
• FlyBaseID: FBgn0030801
• Length: 238
• Species: Drosophila melanogaster
• Sequence 2: NP_012523.2
• Gene: RPC17 / 853442
• SGDID: S000003548
• Length: 161
• Species: Saccharomyces cerevisiae
• Alignment Length: 157
• Identity: 29/157 - (18%)
• Similarity: 65/157 - (41%)
• Gaps: 46/157 - (29%)

  Fly     1 METINPTFSYLTNLEVMQIL----------QK----IKSTKKKFGMRN-------LATVTYEALQ 44
            |:.:....::|::.||::.|          ||    :|.::.| |.:|       |..:|...:.
Yeast     1 MKVLEERNAFLSDYEVLKFLTDLEKKHLWDQKSLAALKKSRSK-GKQNRPYNHPELQGITRNVVN 64

  Fly    45 YL------------------------EESPCKTQTRENIMNYVKDLSSYRLKSQEILQMINDPPT 85
            ||                        |:|.....:.|:....:..|:|::|...|.||::|..|.
Yeast    65 YLSINKNFINQEDEGEERESSGAKDAEKSGISKMSDESFAELMTKLNSFKLFKAEKLQIVNQLPA 129

  Fly    86 SALHTQLLIDDNKAPLTDEENEKIIQL 112
            :.:|...::::..|...::..|:::::
Yeast   130 NMVHLYSIVEECDARFDEKTIEEMLEI 156

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rcp	NP_573175.2	RNA_pol_Rpb4	10..112	CDD:281819	28/146 (19%)
RPC17	NP_012523.2	RNA_pol_Rpb4	10..160	CDD:397794	28/148 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C157345174
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG4168
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	1	0.950	-	0.960964	Normalized mean entropy	S2421
OMA	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0004828
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_103530
Panther	1	1.100	-	-	LDO	PTHR15561
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	8	7.740