DRSC/TRiP Functional Genomics Resources

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Protein Alignment Polr3I and crcp

DIOPT Version :10

Sequence 1:NP_573175.2 Gene:Polr3I / 32678 FlyBaseID:FBgn0030801 Length:238 Species:Drosophila melanogaster
Sequence 2:XP_012812426.1 Gene:crcp / 549232 XenbaseID:XB-GENE-987451 Length:165 Species:Xenopus tropicalis


Alignment Length:100 Identity:32/100 - (32%)
Similarity:55/100 - (55%) Gaps:7/100 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 METINPTFSYLTNLEVMQILQKIKS-------TKKKFGMRNLATVTYEALQYLEESPCKTQTREN 58
            ||..:...:.|:|.||..:|.::|:       .|...|.:||.|:.||.|:||..|||..|:.|.
 Frog     1 MEVKDANAALLSNYEVFHLLTELKAKQREVRKNKNSVGQQNLNTIMYETLKYLSSSPCHYQSPEI 65

  Fly    59 IMNYVKDLSSYRLKSQEILQMINDPPTSALHTQLL 93
            :..::..:..::|...|.||::|..|::|:..||:
 Frog    66 VREFLTAIKGHKLTKAEKLQLLNHRPSTAVEIQLV 100

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr3INP_573175.2 RNA_pol_Rpb4 10..112 CDD:461080 30/90 (33%)
PRK07003 <122..>223 CDD:235906
crcpXP_012812426.1 RPOL4c 1..>99 CDD:469853 30/97 (31%)
Blue background indicates that the domain is not in the aligned region.

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