Protein Alignment Rcp and rpc17

DIOPT Version :9

• Sequence 1: NP_573175.2
• Gene: Rcp / 32678
• FlyBaseID: FBgn0030801
• Length: 238
• Species: Drosophila melanogaster
• Sequence 2: NP_594136.1
• Gene: rpc17 / 2543653
• PomBaseID: SPAPB1E7.10
• Length: 129
• Species: Schizosaccharomyces pombe
• Alignment Length: 122
• Identity: 29/122 - (23%)
• Similarity: 63/122 - (51%)
• Gaps: 11/122 - (9%)

  Fly     1 METINPTFSYLTNLEVMQILQKIKS-----TKKKFGMR-----NLATVTYEALQYL-EESPCKTQ 54
            |:.:....:||||.||...|:::::     |:::...:     ||.|:.:|.|:|| .:..|:..
pombe     1 MKVLEARDAYLTNAEVFFHLKEMENEQNARTQERGAAQALVCENLRTIQFEILKYLSSQGNCEGL 65

  Fly    55 TRENIMNYVKDLSSYRLKSQEILQMINDPPTSALHTQLLIDDNKAPLTDEENEKIIQ 111
            |:|..::.:...:.:.|...|||.::|:.|:|.......|:..:....:|:..|:::
pombe    66 TKERFLDCIAIFNEFELTKAEILVILNNKPSSVPELYACIEGIEERFKEEDIFKLVE 122

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rcp	NP_573175.2	RNA_pol_Rpb4	10..112	CDD:281819	28/113 (25%)
rpc17	NP_594136.1	RNA_pol_Rpb4	10..128	CDD:281819	28/113 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG4168
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0004828
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_103530
Panther	1	1.100	-	-	LDO	PTHR15561
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R3651
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	8	7.800