DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rcp and Crcp

DIOPT Version :9

Sequence 1:NP_573175.2 Gene:Rcp / 32678 FlyBaseID:FBgn0030801 Length:238 Species:Drosophila melanogaster
Sequence 2:NP_031787.1 Gene:Crcp / 12909 MGIID:1100818 Length:148 Species:Mus musculus


Alignment Length:148 Identity:41/148 - (27%)
Similarity:78/148 - (52%) Gaps:13/148 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 METINPTFSYLTNLEVMQILQKIKSTKKK-------FGMRNLATVTYEALQYLEESPCKTQTREN 58
            ||..:...:.|:|.||.|:|..:|..:|:       .|.:||..:|||.|:|:.::||:.|:...
Mouse     1 MEVKDANAALLSNYEVFQLLTDLKEQRKESGKNKHSAGQQNLNAITYETLKYISKTPCRNQSPAI 65

  Fly    59 IMNYVKDLSSYRLKSQEILQMINDPPTSALHTQLLIDDNKAPLTDEENEKIIQLSYKHFHGGETK 123
            :..::..:.|::|...|.||::|..|.:|:..||::::::..||:|:.|.::.........|...
Mouse    66 VQEFLTAMKSHKLTKAEKLQLLNHRPMTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAGPED 130

  Fly   124 GAAKET------PAEKPA 135
            ..:|.|      ..|:||
Mouse   131 EQSKSTSNDVAMEEEEPA 148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RcpNP_573175.2 RNA_pol_Rpb4 10..112 CDD:281819 33/108 (31%)
CrcpNP_031787.1 RPOL4c 1..126 CDD:128904 35/124 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 124..148 4/23 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167845413
Domainoid 1 1.000 72 1.000 Domainoid score I9335
eggNOG 1 0.900 - - E1_KOG4168
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H40587
Inparanoid 1 1.050 75 1.000 Inparanoid score I5257
Isobase 1 0.950 - 0.960964 Normalized mean entropy S2421
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004828
OrthoInspector 1 1.000 - - oto93822
orthoMCL 1 0.900 - - OOG6_103530
Panther 1 1.100 - - LDO PTHR15561
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3651
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.730

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